RNA id: TU267599


Basic Information

Item Value
RNA id TU267599
length 549
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G197087
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 27115966 ~ 27116514 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGGGCtcagtagctatgtttccatccacatgtttttatctgaattaagtgatatcgaatgaaaaatgccttatggaaacagtaaaattcgatagaatttcatgaatatcgactcaaaggaaatatgttcggtctcatcggattttctcttgatcgatatacggcttatgcgataaacgctgatggaaatgttatttgccgaataaattaatgaattgcgattaagttttaggtcattttatggttgcaacccaccacaaaacgaagaagaagaaatttTAGTTAATTTctgcccagtatttccgctctgtttgcacacttgaaaggtgtcaacaaagacagatggaagtggacgaacgaggagacgagagactttttgaatttaattcacgagcaaaatataacggctattttagatagcaaaaatctaagaaatgccataatttatcaggaactcgcgaaggaaatgaccaacaaaggaCATCctccggagtaaatggaaggcgctcaaacagtgatatacagtacaggccaaaagtttggacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267596 lncRNA upstream 11458 27064726 ~ 27104508 (+) True G197084
TU267581 lncRNA upstream 162161 26884319 ~ 26953805 (+) False pwwp2b
TU267570 lncRNA upstream 369881 26740257 ~ 26746085 (+) True G197069
TU267571 lncRNA upstream 372819 26740257 ~ 26743147 (+) False G197069
TU267520 lncRNA upstream 488264 26624635 ~ 26627702 (+) True G197035
TU267601 lncRNA downstream 26057 27142571 ~ 27142786 (+) True G197089
TU267660 lncRNA downstream 148765 27265279 ~ 27265508 (+) True G197137
TU267667 lncRNA downstream 182654 27299168 ~ 27299994 (+) True G197143
TU267671 lncRNA downstream 183596 27300110 ~ 27301368 (+) True G197146
TU267683 lncRNA downstream 252722 27369236 ~ 27369931 (+) True G197158
XM_039783660.1 mRNA upstream 16243 26926418 ~ 27099723 (+) True LOC120547882
XM_039783659.1 mRNA upstream 16243 26926418 ~ 27099723 (+) False LOC120547882
XM_039784217.1 mRNA upstream 231532 26874215 ~ 26884434 (+) False pwwp2b
XM_039784218.1 mRNA upstream 231532 26874217 ~ 26884434 (+) True pwwp2b
XM_039783000.1 mRNA upstream 242298 26865808 ~ 26873668 (+) False LOC120547537
XM_039784914.1 mRNA downstream 60454 27176968 ~ 27206666 (+) True valopa
XM_039784380.1 mRNA downstream 335436 27451950 ~ 27511592 (+) True LOC120548261
XM_039784381.1 mRNA downstream 361992 27478506 ~ 27511592 (+) False LOC120548261
XM_039783993.1 mRNA downstream 438414 27554928 ~ 27781041 (+) False LOC120548047
XM_039783992.1 mRNA downstream 438415 27554929 ~ 27781041 (+) True LOC120548047
XR_005637113.1 other upstream 6826 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 380179 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 452181 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 1133128 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 1291289 25817251 ~ 25824677 (+) False LOC120548053
XR_005637159.1 other downstream 1996174 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 1996368 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 2231911 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 2420005 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 2478778 29595292 ~ 29596825 (+) False LOC120547718

Expression Profile