RNA id: TU267601


Basic Information

Item Value
RNA id TU267601
length 216
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G197089
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 27142571 ~ 27142786 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgcctgtttccaggcgctaattggtcgcaaagacggacgtaaccgatgcaggctatttacaaacagggcgcacttgggtaaaatcgcagattgtctgccacatgagcgagaagagacaagttgcgctttcaatatgcgttcgtgggagggtcgtggggaaagtgggagttccacccaaaaaggtgggaggataagcgcaaagtgcccctaattata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267599 lncRNA upstream 26057 27115966 ~ 27116514 (+) True G197087
TU267596 lncRNA upstream 38063 27064726 ~ 27104508 (+) True G197084
TU267581 lncRNA upstream 188766 26884319 ~ 26953805 (+) False pwwp2b
TU267570 lncRNA upstream 396486 26740257 ~ 26746085 (+) True G197069
TU267571 lncRNA upstream 399424 26740257 ~ 26743147 (+) False G197069
TU267660 lncRNA downstream 122493 27265279 ~ 27265508 (+) True G197137
TU267667 lncRNA downstream 156382 27299168 ~ 27299994 (+) True G197143
TU267671 lncRNA downstream 157324 27300110 ~ 27301368 (+) True G197146
TU267683 lncRNA downstream 226450 27369236 ~ 27369931 (+) True G197158
TU267703 lncRNA downstream 367862 27510648 ~ 27511587 (+) False LOC120548261
XM_039783660.1 mRNA upstream 42848 26926418 ~ 27099723 (+) True LOC120547882
XM_039783659.1 mRNA upstream 42848 26926418 ~ 27099723 (+) False LOC120547882
XM_039784217.1 mRNA upstream 258137 26874215 ~ 26884434 (+) False pwwp2b
XM_039784218.1 mRNA upstream 258137 26874217 ~ 26884434 (+) True pwwp2b
XM_039782997.1 mRNA upstream 268903 26866133 ~ 26873668 (+) True LOC120547537
XM_039784914.1 mRNA downstream 34182 27176968 ~ 27206666 (+) True valopa
XM_039784380.1 mRNA downstream 309164 27451950 ~ 27511592 (+) True LOC120548261
XM_039784381.1 mRNA downstream 335720 27478506 ~ 27511592 (+) False LOC120548261
XM_039783993.1 mRNA downstream 412142 27554928 ~ 27781041 (+) False LOC120548047
XM_039783992.1 mRNA downstream 412143 27554929 ~ 27781041 (+) True LOC120548047
XR_005637113.1 other upstream 33431 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 406784 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 478786 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 1159733 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 1317894 25817251 ~ 25824677 (+) False LOC120548053
XR_005637159.1 other downstream 1969902 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 1970096 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 2205639 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 2393733 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 2452506 29595292 ~ 29596825 (+) False LOC120547718

Expression Profile