RNA id: XM_039783993.1


Basic Information

Item Value
RNA id XM_039783993.1
length 4336
RNA type mRNA
GC content 0.58
exon number 17
gene id LOC120548047
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 27554928 ~ 27781041 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAGTCTGTCAGGACTCGGCGGGGAGGGACTTTCTGGACACTGCGCAACAAGTGCTAGGGCGCAAGAAGTGGCTGATAAGAGTGAATGACACGGCATGCGGTAGCTCAAACAGGAGACGGGTCTTTATGTGGATGATTAGGTACGATTTACTACCTCAACCGCGCTATATTACATTTCATGTAGCCTACTGCCGCTTGGAAAGGATGTGTCGCAGTAAAGTTTATCCGGACTTTGAAAGCGCGCCGTTCGAAGTTTCCCCGCATGTCACAGCGCAGAATACAGTTTGGAGGACTTCTTATAACACAGAATGGCAAAGATGCAGCGTTTCACACCCCTGGTGATTTACTTTCCTTTAGGGTTTAATCGCAAAAGTAGCGCTGGAAGTTTACAGCTGTTGAGGAAGCAGCAGGTGAGCAGCGGAGCGTGAGATTTGGACTGCAGCCCGATCAAACGCTGTGCTTTAATGTGACGGAAGGCAAAGTGAAATGGTCCCGACTTGTTACAGAAGCTGGGAGGATATAACTTGAAAGGAGCGTGtttttagaaaagaaaaaaaaaaaagaagaaaattcaTTAATTCCACCATGAGAGCGCTGACTTTACTGTGCGTAATTCTCGGGCTGTGGGAGTCGAGCCTGAGCAACAGAAACTGTCCGGACCTGATCGTTGACAGCTGTCACTGCTCGGCGGAGAGGTCCAAGGACCTGAGCAGGCAGCATGTCCGAGTCAAAGTTGTGTGCGATGATGTGGACCtgatggacaccctgcagccccGCTTCCTACCCAACAGAACCGTGTCCCTaaacctgagtaacaacaagaTCTCCCTGCTAAGGAATGGCTCCTTCTATGGCTTGGCTGCCCTAGAAAAACTGGACCTGAAGAATAATTTGATAAGCACAGTGGAGCACGGGGCCTTCCGTGGTCTGCTGGCTCTGAGGAGACTGGACCTGTCCAAAAACAGGATTGGCTGTCTCTCGCCTGAAATATTTCTCGATCTGGGCAACCTCTCAAAATTGAATTTATCTGGGAACATCTTCTCCACCCTGACCGTGGGACTCTTTACACACCTCGTGGCTCTCAGAGTGCTGCACTTCAGCACTGAGACTCTGTTCTGTGACTGTCAGCTGAAGTGGCTGCTCCACTGGGCTCGAAGTAACTCGGTGAGGATTAGCAATGACACGGTGTGTGTGTTCCCTACCCGCCTCCACGGACTAGAGTTTCGCAACCAACGTGAACAACAGCTCAGATGTGATGGACCTCTGGAGATGCCCCTCTTCCAGCTCATCCCCTCCCAGAGACAACTGGTTTTTCGCGGAGACCGTCTGCCCCTGCAGTGCACCGCCTCCTACCTGGACCCTTCGGTGGAGCTGCGGTGGCGTCACAACGGCCACAGCGTCGCCACGCAGGAGGACCGGGGCGTCTACGTGGAGGAAACCCTGCTTCACGACTGCTGCCTCCTCACCAGTGAGGTCATCCTCTCCAACATCGACGTGGGCACCGCTGGCATCTGGGAGTGCCTGGTGACCAGTTCCCGTGGCAACACTTCTCAGCAAATGGAGATAGTTGTTCTGGAGACGTCGGCACCGTACTGCCCCGCTGACAGAGTCACCAACAACAAGGGGGACTTCAGGTGGCCAAAGACTTTAGCTGGCATCTTCTCCTTCCTGCCCTGCGCTCCTGCCACCTTTGGCTCTGCCCCCCACCCCTCTGGCAGCGCTCCTCACCCCTCCAGCCAGAAGGAGAAGAAGGCGTGGCGGAGCTGCGACCGGGCTGGACGCTGGGCTGAAGAGGACTACACCCAGTGCCCGTATGCCAGTGAACTGACCCGCGTGCTGTATGAGCTCACACAGATAACTATAAATACCACCAATGCTCAGCTTTTAGGCCAGCAGTTAGTGGCCTTCACCAGCAGGGCGGCACACTTCACCGATGTCATGGATGTCATCTTCGTCACACACCTGGTGGAGAGACTGACAAGGCTGGTGGAGAAACGTAGAGATCTAGGGGACTACATATCAGACATAGCCAGCAACATGATGCTAGTGGAGGAGCATATCCTGTGGATGGCGCAGAATGAGGCCAGAGCGTGCACTCGCATCGTCCAGTGTGTGGAGCGCATCGCTGACCTGGCACTGACCGGAGACAATCAGGTCATTTCCAAGGTATCTGCTAACATAGCTCTGGAGGCCTTTGTGATCCACCCGGCTAACTTCCACGGTCTGTCCTGTACGGCACTTCAACGGCCCCCGTCATCATCCGCCACCTCGGCCCGCCCTGACAGCCCCTCCCACACTGACAAGGACACGGGCAGGGAGCGTAATGCCATGGGGGAATCGATGCTCAACTTCAAATGTCACACTGTCAACAACAGCGGCTCACCGGCCAGTCAGCTCAGCAAGGATCTGAAGAAGGTGCTGTCTTTCCCCCCATACCCTGGGGAGTATTTGCACCCGGTCGTGTATGCCTGCACGGCGGTCATGTTGCTCTGCCTCTTCGCCTCCATCATCACGTACATAGTGCACCACAGTGCAATCCGCATCAGTCGGAAGGGATGGCATATGCTTCTCAACTTCTGTTTCCACACGGCTCTGACCTTTGCTGTGTTTGCCGGCGGCATCAATCGAATCAAATACCCCATCATCTGTCAAGCAGTCGGGGTTGTGCTGCACTACTCGTCTCTGTCGACCATGCTGTGGCTCGGGGTGACGGCCAGGAACATTTACAAACAGGTGACCAAGAAGCCTCCGCAGAGCCAAGATGGTGACCCGCCTCCCTCCCCTAAACAGCCCCCCCTGTTGAGATTTTATTTAGTCAGCGGTGGAGTGCCCCTCATCATCTGCGGGGTCACGGCAGCCGTCAATATAGACAACTATGGCAGCGGGGAGCAAGCGCCGTACTGCTGGATGGCGTGGGAGCCCAGCCTGGGGGCCTTCTTTGGCCCCGTGGCCCTCATCGCCGTGGTGACGTGCATCTACTTCCTCTGCACCTTCATCCAGCTGCGGCGACGCCCCGAAAAGAAGTACGAGCTCAAGCAGCTGACGGAGGAGCAGCAGAGGCTGGCCGCCGTCGACGCGCCCACCCACTGCCACCAGGGAGCCGAGCCCGGAGCCCTGGCCGCCCCGCCCGGTGGGGGCCACTGCCCCGCCGGCTGCCCGGGGGTTCCCATCAACCCCGCGCTGCTGGCCAACGAGCACTCCTTCAAGGCTCAGCTACGAACGGCGGCCTTCACCCTTTTCCTGTTCCTGGCCACCTGGACCTTCGGGGCGCTGGCCGTGTCCCAGGGCCACTTCCTGGACATGATCTTCAGCTGCCTGTACGGTGCCTTCTCCGTCACCCTCGGCCTCTTCATCCTCATCCATCACTGTGCCAAGCGGGACGACGTCTGGCATTGCTGGTGTTCCTGTTGTCCCGGACGTCGACAGGCCGACGCCTGTTCCGGCGCCCACGTGCCTGCTCAGGCGCGGCCCAAAGTCAACGTGAACGGAGACACCCCCGGGCACGGCCACAGCCACGGCCAGTGCCACCACGACTCGCCGTGTCAGGGCAAAGCGCTGACGAGCTGCGGCCACGGCAGTTTGGGTCGCTGTAAACACGGCGCCCTCCCGTCCTCGCATAATCACGTGGCGTGTCTGGCGCCGGTGATGCCGTGCTGCGCGGCGCTACACAGCCAGCAGCTGATGGAGGAGGAGCCCGCGGCGACACACGTGCTGCTACATGCCGACCCGGAGGGTTACCGGCCGGGGATCCAGTTGCACCCCTGCCTAAAGAGCAGCACCAGGACTAAAGGCCGTCACTTCAGCCGCCGGGCCGGCGCCGCTGCCTGCGGAGCGGGGAGCGAGAGGGAGTACGCCTATCACATCCCCTCCAGCGTGGACGGAGGCAGCGTGCACAGCTCACACACTGACAGCCCCCACAGCACACACGAGCGTCACGCCCACGTCTGTCCACACCTGGCCCACGAAGGCCACCAGGACGGGCATCACACATGCCACGCCGCGGCAGCTACGACGCACGCGGCCCTGGCGTGCCACAATCCCTGCCACAGGCACATCTGCTGCGCCAAGGCAGACCTTTTCCCCTCTCTGTGCCCGGCAGAGGCGGGCGACACGGGCGTTTTCCTGTGCGGCTGCGGCAAAGTTGCCGAGCAGGACCCGATGGCAACACATCACCACCTGGAGATGCACGCCCCGCGCAGACAATCCTACCCTCAGAACCCGCCCAATCAGAATGGGATTCTAAAGGGGGGGCTGCACGAAGGACTCCTGTACACCTCAGACAGCACAGGGAATATACGCACCGGACCCTGGAAGAATGAAACTACTGTGTAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267703 lncRNA upstream 43341 27510648 ~ 27511587 (+) False LOC120548261
TU267683 lncRNA upstream 184997 27369236 ~ 27369931 (+) True G197158
TU267671 lncRNA upstream 253560 27300110 ~ 27301368 (+) True G197146
TU267667 lncRNA upstream 254934 27299168 ~ 27299994 (+) True G197143
TU267660 lncRNA upstream 289420 27265279 ~ 27265508 (+) True G197137
TU267770 lncRNA downstream 223536 28004577 ~ 28006159 (+) True G197237
TU267805 lncRNA downstream 469717 28250758 ~ 28251552 (+) True G197270
TU267815 lncRNA downstream 519123 28300164 ~ 28302330 (+) False ccnj
XR_005637196.1 lncRNA downstream 628429 28409470 ~ 28411483 (+) True LOC120548567
TU267828 lncRNA downstream 668539 28449580 ~ 28452009 (+) False G197287
XM_039784380.1 mRNA upstream 43336 27451950 ~ 27511592 (+) True LOC120548261
XM_039784381.1 mRNA upstream 43336 27478506 ~ 27511592 (+) False LOC120548261
XM_039784914.1 mRNA upstream 348262 27176968 ~ 27206666 (+) True valopa
XM_039783660.1 mRNA upstream 455205 26926418 ~ 27099723 (+) True LOC120547882
XM_039783659.1 mRNA upstream 455205 26926418 ~ 27099723 (+) False LOC120547882
XM_039784780.1 mRNA downstream 27263 27808304 ~ 27878568 (+) True LOC120548504
XM_039784347.1 mRNA downstream 105202 27886243 ~ 27887609 (+) True vox
XM_039784781.1 mRNA downstream 110409 27891450 ~ 27900204 (+) True vent
XM_039784137.1 mRNA downstream 450754 28231795 ~ 28275999 (+) False blnk
XM_039784138.1 mRNA downstream 450755 28231796 ~ 28275999 (+) False blnk
XR_005637113.1 other upstream 445788 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 819141 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 891143 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 1572090 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 1730251 25817251 ~ 25824677 (+) False LOC120548053
XR_005637159.1 other downstream 1331647 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 1331841 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 1567384 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 1755478 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 1814251 29595292 ~ 29596825 (+) False LOC120547718

Expression Profile