RNA id: TU267770


Basic Information

Item Value
RNA id TU267770
length 1583
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G197237
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 28004577 ~ 28006159 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcttggaccaattctattttccttatatatgcttcctctaggacatattattaggaaacactcaattaattatcactgctacgcagacgatacccaattatatctgtcaattaagccagatgaaagtggtcagttagcaagacttcaaacgtgtgttgaggatataaaatcctggatgacccacaacttcctgatgttaaactcagacaaaacggaagttattgtgataggaccaacgcgccgaacttcgttttcgaagatatagctactctggatggtattgccctggcctccagcactgcggtcagaaatttgggagttatttttgatcaggatatatccttcaacgcccatttaaaacaaacctcaagaatagcctttttccatcttcgtaacattgccaaaatcaggaatatcctgtctcagaatgatgctgaaaaactagtccatgcattcgttacttccagactagattactgcaattccttattatcaggttgcccaaataagtcccttaaggctctccagctgatccagaatgctgcagcacgtgttctgacgagaactaagagaagagatcatatttctcctgtattagcttctctgcattggcttcctgtgaagtctaggatcgaatttaaaatcctcctcctgacttacaaagctctaaatggtcaagcaccatcatacctagaagagctcttagtaccttattgtcccactagggcactgcgctcccggaatgcggggctactcgtggttcctagagtctctggaagtagactgggggccagggccttcagctatcaggctccgcttctgtggaaccagcttccagtctgggttcgaggggcagacaccgtcgccacattcaagagtaaactaaaaaccctcctctttgacaaagcttatagttagggagtgaggagttgcagcgtccacctaacccggcccacctgcttctcctcgtagttagttatgctattacaattctagactgcaggggatgctgtttccttcctatgacacactgagctgctctctcttctctacttgttacttctgtatgcatcctgtcccagaattgcttgttactaatctagctctggggagtttactccccggagtccttatgtttcttcttcgcagagctatgctctgtgattctctgcaaatcccggccgcatcctgctgcatcctgctgcatcctgctgcatccgctgcatcctgctgcatccgccgcatccacccatgctctgcagcgccacgttacatcccgcaacgccctgctgtgatgttcctatgcacagagtagtctggatccggtataggggactgcactactcagtatgacacgatgtgccctgctatgacatgaacttccacgataaccttcgacgtcactgtgacctttaatgtgactattatcgccactgttcatcacacccccaaccggcccgtcagacaccgcctaccaagagtctgggtctgccgaggtttcttcctaaaagggagtttttccttgccactgtcgcgatagccactgctaatgcttgctcttgatggaattactgtaattgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267715 lncRNA upstream 399752 27569913 ~ 27604825 (+) False LOC120548047
TU267703 lncRNA upstream 492990 27510648 ~ 27511587 (+) False LOC120548261
TU267683 lncRNA upstream 634646 27369236 ~ 27369931 (+) True G197158
TU267671 lncRNA upstream 703209 27300110 ~ 27301368 (+) True G197146
TU267667 lncRNA upstream 704583 27299168 ~ 27299994 (+) True G197143
TU267805 lncRNA downstream 244599 28250758 ~ 28251552 (+) True G197270
TU267815 lncRNA downstream 294005 28300164 ~ 28302330 (+) False ccnj
XR_005637196.1 lncRNA downstream 403311 28409470 ~ 28411483 (+) True LOC120548567
TU267828 lncRNA downstream 443421 28449580 ~ 28452009 (+) False G197287
TU267829 lncRNA downstream 443421 28449580 ~ 28452009 (+) True G197287
XM_039784781.1 mRNA upstream 104373 27891450 ~ 27900204 (+) True vent
XM_039784347.1 mRNA upstream 116968 27886243 ~ 27887609 (+) True vox
XM_039784780.1 mRNA upstream 126009 27808304 ~ 27878568 (+) True LOC120548504
XM_039783993.1 mRNA upstream 223536 27554928 ~ 27781041 (+) False LOC120548047
XM_039783992.1 mRNA upstream 223536 27554929 ~ 27781041 (+) True LOC120548047
XM_039784137.1 mRNA downstream 225636 28231795 ~ 28275999 (+) False blnk
XM_039784138.1 mRNA downstream 225637 28231796 ~ 28275999 (+) False blnk
XM_039784139.1 mRNA downstream 248961 28255120 ~ 28275999 (+) True blnk
XM_039782996.1 mRNA downstream 288046 28294205 ~ 28302333 (+) True ccnj
XM_039783782.1 mRNA downstream 314588 28320747 ~ 28350987 (+) True btaf1
XR_005637113.1 other upstream 895437 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 1268790 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 1340792 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 2021739 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 2179900 25817251 ~ 25824677 (+) False LOC120548053
XR_005637159.1 other downstream 1106529 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 1106723 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 1342266 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 1530360 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 1589133 29595292 ~ 29596825 (+) False LOC120547718

Expression Profile