RNA id: XM_039782996.1


Basic Information

Item Value
RNA id XM_039782996.1
length 1941
RNA type mRNA
GC content 0.49
exon number 6
gene id ccnj
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 28294205 ~ 28302333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccAGTGTTTTGTGAACTCGTGCTGAGCCGAACGGTCTCACACTGACTACAACGATGAGTGTGAGCAAAAGCATGTCACGGCTAGTTTGATTTGAAGTTTACTTCAGCAAAACTGCCCGTAATATTTACTACATGTGCTCATTTGACGTTTCCAAAGCCCTGTTAAATGGAGCTAGAGGACCAATGGTGGAAAGGACAACTCGCTGCAGATATATACAAGGCGCTACGATACAAAGAGCTGGAGTTGCCGTCCTACAAAGGCCAGTCCCCTCAGCTCAACCTGAGACGATACTTTGCTGACCTCGTCGCCATCGTCAGCAACCGCTTCAGGCTGTGTCCCGCCGCCAGACACCTGGCCGTCTACCTCCTGGACCTCTTCATGGACCGCTATGATGTCACGGTGCAGCAGCTCCACATGGTCTCGCTGTCATGTCTTCTGTTGGCCAGTAAATTTGAGGAAAGGGAGGACCGGGTGCCCAAGCTGGAGACCCTGAACAGCCTGGGCTGCATGAGCTCCATGAACCTGGTCCTGACCAAGCAGGGTTTACTTCACATGGAGCTGCTCCTGCTGGAGACCTTCCAGTGGAACCTGTACCTGCCGACAGCCGCGCATTTCATAGAATACTACCTGTCTATTGCCGTCCACGAGGGAGACCTCCACGATGGCTGGCCTATGACCTGCCTGGAGAAGACCAAACTATTCATGGCCAAGTATGCTGATTACTTCCTGGAGGTTTCCTTGCAGGatcatgtgtttttgtgttttgcccCCTCGCTGGTGTCTGCTGCGTGTGTGGCCACCTCCCGCCTCATCCTCCACCTGTCCCCTACATGGCCGCCCCGACTGCAACGCCTCACAGGCTACACATGGGAGAACCTGGTCCCATGTGCCGAGAAACTCCTCATtgCACATGATGGTGACGTCAAAGAGGCCAACAAGCAGAAGTGCCAGCAGcccagccagcagcagcagcagcagcaacaacagcaacagggCCAGACGGTGTACCACGGTTCAGGCCAGACAGCCACTGTGGCCCAGTACCTGCACTGGCCCTGCGTGCAGTATCCCCAGCAGGCTCCGCAGCCGGGCCTGGCCCCTAACCACAGGCCTGCCTCCTACCTCAGCCActccaccaccagcctgcagaCTCCTAACGGCAACACCCAGGCCATCGCCGCCCTACAGGATCCAAAGTCCAGCATTACTAACCGGGCTTACCAAGTCAGCATGCACTACACCTGCGCTGCTCCGTGCTTTGACAGATAATGGGTTTTTCAGGGTGCagtaatttttttggggggggaagaAGAGATGCAAGATGTGATCTGTTTCTCTTGAAAATAACAGAATACCCTGAAAGagtgtttttaatttgtaaGAGACTTGATGAGATTGGTACAACACGTTGATCCATATGTTGTATGTACACAATGTGCAATATGCATACTCTGCTGTAATTTTCTGTGGAGAGCCTGCAGTAggattttttggttttgtttgagATATTGGGTATGAATGTTGTTGTTAGGTGGCTAGAGGCAGAGTTTGCACCACTGTACCCACCAGTGTTACTGTATAATTTAGCTACAGACCAAAAAAAGTCTTGTATTTATTTGAGCCAAATTACCTCAGAAGTATTGAATGTAAAATACCTCATTGCCTATAGTCTTTAATAAGTTAAGGGCAGTTACAAAAAGGGACTTAAGTTGGTTTGTGGTTGAGATTAGAGAGCACAGTTTATGTAGGTGTTCTGTACCTCgaacttttcagtttttttttgttgagtgtCATTTCTAAAACTTAAAGGAAAAAATACTTCTGTAGATGTCACAATTTATGTGCAGAGAAAATTGTTGCTCTTCTGAGGATTCCAGTCAGTGCTGTGCACTTTGATGATGatagttttaaataaaaaaaaaactgttagtTTAACTGAGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267805 lncRNA upstream 42653 28250758 ~ 28251552 (+) True G197270
TU267770 lncRNA upstream 288046 28004577 ~ 28006159 (+) True G197237
TU267715 lncRNA upstream 689380 27569913 ~ 27604825 (+) False LOC120548047
TU267703 lncRNA upstream 782618 27510648 ~ 27511587 (+) False LOC120548261
TU267683 lncRNA upstream 924274 27369236 ~ 27369931 (+) True G197158
XR_005637196.1 lncRNA downstream 107137 28409470 ~ 28411483 (+) True LOC120548567
TU267828 lncRNA downstream 147247 28449580 ~ 28452009 (+) False G197287
TU267829 lncRNA downstream 147247 28449580 ~ 28452009 (+) True G197287
TU267842 lncRNA downstream 162813 28465146 ~ 28474917 (+) True G197299
TU267942 lncRNA downstream 206645 28508978 ~ 28510477 (+) True G197378
XM_039784137.1 mRNA upstream 18206 28231795 ~ 28275999 (+) False blnk
XM_039784138.1 mRNA upstream 18206 28231796 ~ 28275999 (+) False blnk
XM_039784139.1 mRNA upstream 18206 28255120 ~ 28275999 (+) True blnk
XM_039784781.1 mRNA upstream 394001 27891450 ~ 27900204 (+) True vent
XM_039784347.1 mRNA upstream 406596 27886243 ~ 27887609 (+) True vox
XM_039783782.1 mRNA downstream 18414 28320747 ~ 28350987 (+) True btaf1
XM_039784912.1 mRNA downstream 109933 28412266 ~ 28447794 (+) True march5
XM_039784913.1 mRNA downstream 112013 28414346 ~ 28447794 (+) False march5
XM_039783043.1 mRNA downstream 185190 28487523 ~ 28508440 (+) True LOC120547570
XM_039783789.1 mRNA downstream 332995 28635328 ~ 28686068 (+) False LOC120547955
XR_005637113.1 other upstream 1185065 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 1558418 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 1630420 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 2311367 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 2469528 25817251 ~ 25824677 (+) False LOC120548053
XR_005637159.1 other downstream 810355 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 810549 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 1046092 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 1234186 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 1292959 29595292 ~ 29596825 (+) False LOC120547718

Expression Profile