RNA id: TU267842


Basic Information

Item Value
RNA id TU267842
length 3604
lncRNA type inter_gene
GC content 0.42
exon number 7
gene id G197299
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 28465146 ~ 28474917 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGACAATAGCTGAGGTATGAAGGCCTTGAGGCGTGGGAGAGTTACATCGTCCAAAGCCTCTTTGAGCTCGTCTTTGGTCCAAGCAACCTCGGTCATTAGTAGACGGAGGTAGTACATGGCGTGCTGGTGAGGCTGCTCGGCTCTGAAGTTATTCAAAGACCTCATGTACGCTTCTTTGATGATGTCAAAGCGCTTCTCATCTACCTCAAAGGTGGCCATCTTCTCAATGATCTTCTTCAGCAGGATATGCTGTTTGTCACTGTAACCTTTAACAGACAGCTGCAGCAGACAGTGATAGAGGACAGATGGTACATGAAAGATAAGGTCAGCCTGAAACTGTGGtttcatttgttgttttgttagttttttttgtttgttttgaagtggcattttaggccttttattagataggacagctttagacatgaaaggggagagagagagagggagcaacatgcagcaaagggccgcaggtcagaattgAACACGCTACTGCTGCCTCGAGAACTAAGCCTCTgaatatgggcgcacgctctaccaggtgagctacccaggcgccccgaTTTGAAGGTTTtgacctatttatttatttatgtgtggAATTATTGGCTGGCCAAATGATTGTTAGGAAAAGCTCATCACTCCCCCGCTTGAGATGAGTCACCACCGCTACAATAATTACAAAATATGTAAAAGCACATCTAGATTTGCCTCGAATGTtccaataaaattaaaatgtggagCTTAAGCAAAAGATTCCTATCGaccacaagggttaaaaaaataataaaataaaaaaggtaacaaaaaggCTGATCTATATTAGGAAGCACCACTTCACCATCTACTGCAGTGCAAACATATTTCACTGTGGTCTCTTGGCTTGACTTAAAGGTTTTTTTCTATGCAaattagcatttaaaaaatggaAAAGAACAGTCAAGGTTATTTAAAGCTTCTACTTTTGCAATGTCATCTGCCCCTTATGGCCCTTCATGATTCAGCAAAACCTCCAGCTACATGGCTACGCTCTGACTCATCCCATTCCTCCCCACTGCCTGTCGCTCGGTCTCTGCGGTGACACATGTTCAAAGTAATCTCTCCAAACATCATTAACCTTGACAAACATCCGGCCAGCCACACCAATACTGCTGACTCAAATCAATTACATACAACCCTTTACATAACTAAAAAGATAGATAGCTGTCTCTAAGGACACACCACAATCATGAATTCACTGATGAGAGGAAGCTAATGAATGCAGAGTACTAGGTCACGTGCCAAAGGGTGCAAAGTGTTAGTGAAGGAGTTAGAAAAgcttgaaaaagaaaagagcaaaACACCACCCCCGCAAACCAGTTTCATTCATGGGTAAGTTGTTACTTTGCCATGCAACAATCcctgagacacatacacaccactgaGAAAACTGTATTCATAAATTGGGGAAACAAAGAGGTGCCTGATTGAGCAAGTCACTTGCTATGTCCATCAAACTTCCTGGATACAGATCCACTTCCAATGTCCTTTGTGCACTTGAATCAGCAGAATTGTGTCCTTAAATGTGTCAGAGAATCTGCATCATTTGGCTTTATTCCTGGCGTCTTGCGACAAGACACTATTTCATCTGTGACACATTAGAAGTGAGAGAATGGCAGCCAAAAGAGcaaaaaataattacaaaaaagAAGGTAAAATCTTGACATCCAGTCCATTTCTCCTTCTTTCAGACACACATGCTGTCGGAATATATTATCCTGAATGAATTTTGGAAGTGAATCTGTAATAACAGTCATCCGCCCTTGACTGAAACAGCCAGGATTCAGTGTACACTTAAAAGTATgcacaacattttaaatttgtgagTTTTAATGCCACAGGGGCCTAAAGTGAAAccctattttattattaatttcaaAAACACCAATCTTAGAAATGAAAGTGTTCTGGCAAAGACTGAGGTGTCAAGGCGTTTCAAAATCTGTGCTCTCCTCTaatgaaatataataaacagATTCTCTCAAACATAATTCCTGGAGGTAAATCTTAACCtaagtagaaataaaatgtcaacataGTAGGACTGTATTCAGCTATCCTATAGTTAAATGACATTAAGTTGGTGTTTGCAGGGAATGCAGTAGCAAGCAGACCGTCCTTAAGGTTGGACCAACAGAACACACAGCACTTCACATAATCAATCAAATTGAGCGTGGAAAACCAAGCCATTTCCACACCCTGTCAAAGCCTTTATTGGCACACCCACTTCCCTCCAGACTTCAAACGGCTTACTCACGAGGATGGCATTCATCCCCGAAGCTAGGCCATACACCAGCCCGGCCAGGCGGGCTGCATATGTATACTCTTTTAAATCGTCCTTCAGTAACATGAGTAACAAGTAGGTCATGTTGCAGTGCAGGGGATCTGCGTATAGGTAACgactaaaacaaaaagaacaaaaacaaaaatacatgtttgttGGGAATGAGGGGTTGTCAAAAAGAAAGACAATGCAAGTATGAGAAGAATGATAAGAAGAGTATGTATATGCAGCCTCACGACCAGCTTTCTGTCCCGTAAAAACTGTCAACTATATTCTATGGAAGACTCGTGCCACCACCGTTTGAAGATCAACCTTTAAATCCTAGATTCAACGCGGTGGGTGGAATGCCCCTTGACCGGATGTGATAAATACAGGTGTGCATTTAACCACAACACATCTAAAAGTGAGAAAAGATGATGATCGGTATGCCTGACAACGTGAGAAAATAATTACCATAAAGTAGTCATAAGGGGTTTGCGAGAGgtgggtgagaaaaaaaaaacgggaaaAGGATTGATAAAGAATGAAGAGGAAGATGCAGACATACGAGAGGCTAGACTGGCCAGGTCTGGGTTGAAAGATTGTTTTTAAACAGCATGTTAAGAGTTTTGACAATAAAAGACAGacaattttcatttattgtatCATCCTGTTAGATAAAACCTTCCAGTCTGGCCATAGAGATGGCTTAAAATGACCTGTCGAACCCAGGCCTGGCTGAGTCACAGTAGCCCAGTCTGAGGATGATGAAACTTGGGGACCTAAGGTCTGGGATGCAGCGTGAGGGCGATGGGGAGGAATTTTGAATACTTACATACATCCCATAGACGGTATTTTGGAGGTCATAGTTCAAGCCAGCTAGCTCGGCTGCATATGCATACTCGTTGAGGGAGTCCTTGAGGAGCTCCAGGTATAAATACGCCATGTTACAATGCAATGGGTCCACATACGCAAACGGGCTGAAGAACTCAAAGTTCAGGCATGCCTTGGGCAAGAAGAACTTGTCATCCTGCTTGAACCACACCTTGCTCATAGCTGTGTCCTTGATTAAAGCGGGGACTGATGGAGAGTCTTTCTCAAGAGGGTAGATCTCAAAGTTGGTAGGGATGAACTCGTTTTTCATCGGCAATTTGAACTTGCCGTTGAGGTCTGCACTTGCCCATTTCTCAATGGACTCTTCAGAGATGGCCTCCTGTTTGTACTGTGTGCCATACCACTCTTCTGTTTTGTTGGTTTGCCCCTCAAATGACCTTGACACCACTGCAACTCTAACATGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267828 lncRNA upstream 13137 28449580 ~ 28452009 (+) False G197287
TU267829 lncRNA upstream 13137 28449580 ~ 28452009 (+) True G197287
XR_005637196.1 lncRNA upstream 53663 28409470 ~ 28411483 (+) True LOC120548567
TU267815 lncRNA upstream 162816 28300164 ~ 28302330 (+) False ccnj
TU267805 lncRNA upstream 213594 28250758 ~ 28251552 (+) True G197270
TU267942 lncRNA downstream 34061 28508978 ~ 28510477 (+) True G197378
TU267943 lncRNA downstream 34901 28509818 ~ 28510477 (+) False G197378
TU267985 lncRNA downstream 231966 28706883 ~ 28707205 (+) True G197409
TU268031 lncRNA downstream 392385 28867302 ~ 28867503 (+) True G197439
TU268033 lncRNA downstream 399261 28874178 ~ 28874530 (+) True G197441
XM_039784912.1 mRNA upstream 17352 28412266 ~ 28447794 (+) True march5
XM_039784913.1 mRNA upstream 17352 28414346 ~ 28447794 (+) False march5
XM_039783782.1 mRNA upstream 114159 28320747 ~ 28350987 (+) True btaf1
XM_039782996.1 mRNA upstream 162813 28294205 ~ 28302333 (+) True ccnj
XM_039784139.1 mRNA upstream 189147 28255120 ~ 28275999 (+) True blnk
XM_039783043.1 mRNA downstream 12606 28487523 ~ 28508440 (+) True LOC120547570
XM_039783789.1 mRNA downstream 160411 28635328 ~ 28686068 (+) False LOC120547955
XM_039783790.1 mRNA downstream 163087 28638004 ~ 28686067 (+) True LOC120547955
XM_039783791.1 mRNA downstream 163218 28638135 ~ 28686067 (+) False LOC120547955
XM_039782955.1 mRNA downstream 289480 28764397 ~ 28770079 (+) True LOC120547521
XR_005637113.1 other upstream 1356006 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 1729359 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 1801361 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 2482308 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 2640469 25817251 ~ 25824677 (+) False LOC120548053
XR_005637159.1 other downstream 637771 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 637965 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 873508 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 1061602 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 1120375 29595292 ~ 29596825 (+) False LOC120547718

Expression Profile