RNA id: TU268100


Basic Information

Item Value
RNA id TU268100
length 2192
lncRNA type sense_over
GC content 0.36
exon number 1
gene id LOC120548242
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 29112688 ~ 29177494 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCAGGTTGTAATAAAGACCAATTATACTTTAAAGACCTCCATCAAACAAACACTTGTTTTCTTTGAGCATACTGTACAGTCTGTTTGGAATTACAACACAGCAGTTACCAGCATAGCTAGCATTTACCTCCATTTGATGAAAATAAGCTAACAGAGAAGCAAATGTTCCAGTTGTCATATTTGGAAGTTTGCATAGCTTCTGTGTGAAATAGTTGTTCCTGTGTAGTTATGAGGCATATGCCCAGGGTGCTGTAACTTTAAGGGTTACAAAGAGAACATATAGAGAATGTGTGGGGAGAATttaaatatgttgttgtttatgGGAGAAGAAAAGGTTTAGTTATTTTCTGCACCTCATTCAGCTTTTGTGTCAAGGTCTGTTCCTATACCAACAGTGTTAGAGTATTCTAAACCTTGTGTTAGCGTTCAGTCATATATATGGggctgtgtgtttgcttgtcaTTTTCCACACTCGCAGGTATTTAGACACGGACAACATGCCTTGTGCAACATTTTATCACAGCATGTTAAGGAGATATGCAGGTGTAGATGCCAGAAGACACAAATAGATCAAGAACAGTGGATACCCAGCAACACTATTTTCAGTTTCTCTAGATTTGAATGCTTCAAAGCCTAAAATGAAAACTCAATAAATCATACAGTATTttcatttacttatttttattttcacttgaTTACTACTGAGCTAGCTCTCAGTCGTTGCTAGTCTTTTAcgaaaacaaaattaatttttttcacaCATCATATATGATACAAAGTGCTCCTTCTACTTCAATAAAGGCATCTGTGCGTGTGTAAATGTACACATACCGGAATGCAGAAAGCATAAGAACCAGACAGTAGTcaagattttttgttttgttaattcaAAGAATTGATTTGAATAAGCTAGCATTACAGTTAAGTAAATTTACTAGCTACCGTTGACATTAGTTGCTGGCTTAAGCCTGATTTATGCGTCTGTGTTGAATCTACGCTGTACCAAGTTTatggaccctacgccgtagcctgacctGCATCTTCCCAGaaatgtgattggtcaacttAGCTGTGGCATTTCCGTGTACTCCTTTGTGAACAACATAAAAttgagggttaacttttcctgctacagatttcctcAGAAAGCAAAGGGGagacactttctttttttccgtCTCAAATGCTAGTCGCTCTGAAGCCAATCCCCGTCCCTTTCTCTcttgctctaccacacacacacacacacacacacacacacacacacaccgcctcTGCTATTCTCCTAAAGAGATACGCTAGATCGATGTAGACACACCAGCAATCATGCTATAAACTTTTACTTGCTACAGAACATTGATGACATTGACAACTActtaaattataaaataaaatcaagcctcttgtattttgaaaattaaactctTTAGTATCACCATTTCAATATAAAGATATTAACCACTCAGCCCTACCTTGAGTTAACCCATAGTTGTGCTCATAGGTCTTATGCTATTAGGTTTCTAAGTAGTAGGAGTAAGCTATATTTATTGTGTGTGGGTTAGTGGAGATTTCTTGGATTTAATGAATAAATGCTCCCACATACACACCCCTTTTAAACTCTTGTTTTATGCTTTGCTTTCACAGAGGAAAACAGATTTCACTGAAAGCACAGATGCACCAAATCCAAGGTCAGGATTTTACAAGAAATGGCAAACTGACTTAGCAAAACAGAACTTGCAGTTTGTGTCGGAAATGTTTAAAATCATGCATTAGAGATCCAACTTGGCCCGTATGTTTTGTGACAGGAAGCTTGGTTTCAGCAGGATTAGCATTCCAGGATGTCTGTCCTCACCAAAATACATAAGGTGATTTATTccaatttattatattttttttaaagcattcaTTTCAACTGCATTTTCTAAAAGTATTTTCAGGATTTCCACAACCAGATTAAATTATCAAGATGTGTTGTCCTAATAAAACTGGATGTGcgaaaaatgtgacattttactTGGTGAACACACAGTAGCTCATAATAATATACACAatcatacatacatgcacacatatacatTTATCCAGAATCCATACTGTATAACCTCTTCACCCCAGACAGATGAAACAAGACAAGAACTATAATATATTATCAaagaaattatgtttttaaaagtcaaGAGTAGGATATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268038 lncRNA upstream 283359 28889468 ~ 28891827 (+) True G197446
TU268033 lncRNA upstream 300656 28874178 ~ 28874530 (+) True G197441
TU268031 lncRNA upstream 307683 28867302 ~ 28867503 (+) True G197439
TU267985 lncRNA upstream 467981 28706883 ~ 28707205 (+) True G197409
TU267942 lncRNA upstream 664709 28508978 ~ 28510477 (+) True G197378
TU268110 lncRNA downstream 27891 29205268 ~ 29205577 (+) True G197514
TU268121 lncRNA downstream 116141 29293518 ~ 29294176 (+) True G197525
TU268129 lncRNA downstream 137922 29315299 ~ 29345482 (+) False G197528
TU268131 lncRNA downstream 155138 29332515 ~ 29382606 (+) True G197530
TU268127 lncRNA downstream 167019 29344396 ~ 29347498 (+) True G197528
XM_039784349.1 mRNA upstream 4227 29112688 ~ 29170959 (+) False LOC120548242
XM_039783802.1 mRNA upstream 320963 28817833 ~ 28854223 (+) True LOC120547961
XM_039784801.1 mRNA upstream 373810 28790787 ~ 28801376 (+) True si:dkey-187a12.4
XM_039784802.1 mRNA upstream 377550 28790784 ~ 28797636 (+) False si:dkey-187a12.4
XM_039783971.1 mRNA upstream 385281 28787046 ~ 28789905 (+) True LOC120548038
XM_039783336.1 mRNA downstream 341564 29518941 ~ 29538642 (+) False LOC120547718
XM_039783503.1 mRNA downstream 379886 29557263 ~ 29558335 (+) True LOC120547808
XM_039783338.1 mRNA downstream 451354 29628731 ~ 29632761 (+) True LOC120547721
XM_039784340.1 mRNA downstream 469346 29646723 ~ 29655051 (+) True LOC120548236
XM_039783504.1 mRNA downstream 482035 29659412 ~ 29698143 (+) True pcca
TU268101 other upstream 60305 29112882 ~ 29114881 (+) False LOC120548242
XR_005637113.1 other upstream 2066046 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 2439399 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 2511401 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 3192348 25982745 ~ 25982838 (+) True trnai-uau_2
TU268132 other downstream 171048 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 359142 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 417915 29595292 ~ 29596825 (+) False LOC120547718
XR_005637093.1 other downstream 976134 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other downstream 976134 30153511 ~ 30201781 (+) False LOC120547658

Expression Profile