RNA id: TU268132


Basic Information

Item Value
RNA id TU268132
length 398
RNA type TUCP
GC content 0.50
exon number 2
gene id G197531
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 29348425 ~ 29349928 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGGATGCCTCCAAGTATTCCCAGGATTACAGACAGATCAGTGCCACCTGCCACACGTCCTTTGCATAACACTTCTTCCCCAGCGCAGTCACACACTGTGGCCTGCACCGTGCTGTCCTGCCCCAGACCCTGGTTGTCTGTAACCCTCAGGACCACAGTGTACTCTCCACTGTCTAGCTCTGTGACTAAATTCAGGATGATGCCAGTTTtggATTCGTTCATCCTAGCGGTCCAGTTCTTTGCTGCCATGCCCTGTAAAGAGACGCTGTATGGAGCACCAAAGCCTGGTCCATCTTTATCTGTTACCGTCAGCAGCTGTTGAGCTGATTGTTTGTTACAAACCTGGGAAAACAGAATGTCAGAGTTAAGTCTTTAGTCATTACTGCACAACAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268127 lncRNA upstream 927 29344396 ~ 29347498 (+) True G197528
TU268129 lncRNA upstream 2943 29315299 ~ 29345482 (+) False G197528
TU268121 lncRNA upstream 54249 29293518 ~ 29294176 (+) True G197525
TU268110 lncRNA upstream 142848 29205268 ~ 29205577 (+) True G197514
TU268100 lncRNA upstream 171048 29175186 ~ 29177377 (+) False LOC120548242
TU268134 lncRNA downstream 1778 29351706 ~ 29409987 (+) True G197532
TU268142 lncRNA downstream 10081 29360009 ~ 29365486 (+) True G197537
TU268181 lncRNA downstream 107490 29457418 ~ 29458436 (+) True G197568
TU268185 lncRNA downstream 120084 29470012 ~ 29470956 (+) True G197571
TU268270 lncRNA downstream 354159 29704087 ~ 29705013 (+) True G197635
XM_039784348.1 mRNA upstream 170931 29112688 ~ 29177494 (+) False LOC120548242
XM_039784349.1 mRNA upstream 177466 29112688 ~ 29170959 (+) False LOC120548242
XM_039783802.1 mRNA upstream 494202 28817833 ~ 28854223 (+) True LOC120547961
XM_039784801.1 mRNA upstream 547049 28790787 ~ 28801376 (+) True si:dkey-187a12.4
XM_039784802.1 mRNA upstream 550789 28790784 ~ 28797636 (+) False si:dkey-187a12.4
XM_039783336.1 mRNA downstream 169013 29518941 ~ 29538642 (+) False LOC120547718
XM_039783503.1 mRNA downstream 207335 29557263 ~ 29558335 (+) True LOC120547808
XM_039783338.1 mRNA downstream 278803 29628731 ~ 29632761 (+) True LOC120547721
XM_039784340.1 mRNA downstream 296795 29646723 ~ 29655051 (+) True LOC120548236
XM_039783504.1 mRNA downstream 309484 29659412 ~ 29698143 (+) True pcca
XR_005637159.1 other upstream 170931 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other upstream 233544 29112882 ~ 29114881 (+) False LOC120548242
XR_005637113.1 other upstream 2239285 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 2612638 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 2684640 26663159 ~ 26663785 (+) True G197053
TU268204 other downstream 186591 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 245364 29595292 ~ 29596825 (+) False LOC120547718
XR_005637093.1 other downstream 803583 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other downstream 803583 30153511 ~ 30201781 (+) False LOC120547658
TU268683 other downstream 1884436 31234364 ~ 31234723 (+) True G197999

Expression Profile