RNA id: TU268202


Basic Information

Item Value
RNA id TU268202
length 781
RNA type TUCP
GC content 0.45
exon number 2
gene id LOC120547718
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 29518941 ~ 29619016 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttccagaacagaccagtcacacacacctggaaggcatcaatcactttctgacaggtcgtgacctcttgaccccccaggtcaaaaggtcatccatcaaaatcccacataccaaagtgacagaaacctccTCCTTATATCTCTCACCTCATCACGATGCCTCATCGCCTCTGCTCTGTTGAGATTAAAAACAACTCTGCCACCTACACTCTCGCCAACCCAAGGGCGTTCACTGAGAGCGGCCACTGTGAGGTCCCTCTGCCACCGATGGTGGGTCCCTACTCCCCTGCCAGCGCATTGTTCAATAAGCACATGGGCAGTGCTACCGGGGCTGTCGGCGTCTTCACCTATGACCTTTTCAACCCCAACCTCAACGACTACAACCACATCATGGCTGTCATGTTCTGTGCCCTATGACTGAAACCTCTACTCCAACTGGTTTGCTGTGGGGATCCTTGACAGAGGATACATCTGTGACTACAATCTttatgatatgatgtataatgGAAATGAAAATTTTGTAAGAGCAAAGGCTGATGGCTCCTGCATTTCTTATCAGGGTGGTTATGCTATTGTCAGTGCTTCTGTAACCAGGTTCTAATCAGCCTTCAACATttacctgcaaaaaaaaaaacaacttaaggTCTGGGATCACTACTTCAGTACTTTTTAGTAATGTCCTGGTTCGAGGGataaagataagatagataTCAAATGCACTGACACTTAATACTAATTTGTCTTTGGCTGTAGATGATTATTGACTTCACACAGAATGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268185 lncRNA upstream 124336 29470012 ~ 29470956 (+) True G197571
TU268181 lncRNA upstream 136856 29457418 ~ 29458436 (+) True G197568
TU268134 lncRNA upstream 185305 29351706 ~ 29409987 (+) True G197532
TU268142 lncRNA upstream 229806 29360009 ~ 29365486 (+) True G197537
TU268127 lncRNA upstream 247794 29344396 ~ 29347498 (+) True G197528
TU268270 lncRNA downstream 107262 29704087 ~ 29705013 (+) True G197635
TU268271 lncRNA downstream 111918 29708743 ~ 29710005 (+) True G197636
TU268293 lncRNA downstream 171651 29768476 ~ 29779051 (+) True G197654
TU268320 lncRNA downstream 372965 29969790 ~ 29977939 (+) True G197679
TU268327 lncRNA downstream 397756 29994581 ~ 30000931 (+) True G197686
XM_039783503.1 mRNA upstream 36957 29557263 ~ 29558335 (+) True LOC120547808
XM_039783336.1 mRNA upstream 56650 29518941 ~ 29538642 (+) False LOC120547718
XM_039784348.1 mRNA upstream 417798 29112688 ~ 29177494 (+) False LOC120548242
XM_039784349.1 mRNA upstream 424333 29112688 ~ 29170959 (+) False LOC120548242
XM_039783802.1 mRNA upstream 741069 28817833 ~ 28854223 (+) True LOC120547961
XM_039783338.1 mRNA downstream 31906 29628731 ~ 29632761 (+) True LOC120547721
XM_039784340.1 mRNA downstream 49898 29646723 ~ 29655051 (+) True LOC120548236
XM_039783504.1 mRNA downstream 62587 29659412 ~ 29698143 (+) True pcca
XM_039783843.1 mRNA downstream 359895 29956720 ~ 29963090 (+) True cdt1
XM_039783187.1 mRNA downstream 556686 30153511 ~ 30201781 (+) True LOC120547658
TU268132 other upstream 245364 29348425 ~ 29349928 (+) True G197531
XR_005637159.1 other upstream 417798 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other upstream 480411 29112882 ~ 29114881 (+) False LOC120548242
XR_005637113.1 other upstream 2486152 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 2859505 26725759 ~ 26735787 (+) False tmem254
XR_005637093.1 other downstream 556686 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other downstream 556686 30153511 ~ 30201781 (+) False LOC120547658
TU268683 other downstream 1637539 31234364 ~ 31234723 (+) True G197999
TU268894 other downstream 3196463 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 3365563 32962388 ~ 32965074 (+) True G198245

Expression Profile