RNA id: TU268204


Basic Information

Item Value
RNA id TU268204
length 1495
RNA type TUCP
GC content 0.44
exon number 5
gene id LOC120547718
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 29518941 ~ 29619016 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCACAGCCAGCCTCTTCCCCCACCACACCTCATCACGATGCCTCATCGCCTCTGCTCTGTTGAGATTAAAAACAACTCTGGCTGCTACACTCTCGCCAACCCAAGGGTGTTCACTGAGAGCGGCAACTGTGAGGTCCCTCTGCCACCGATGGTGGGTCCCTACTCCCCTGCCACACCTCATCACGATGCCTCATCGCCTCTGCTCTGTTGAGATTAAAAACAACTCTGCCACCTACACTCTCGCCAACCCAAGGGCGTTCACTGAGAGCGGCCACTGTGAGGTCCCTCTGCCACCGATGGTGGGTCCCTACTCCCCTGCCAGCGCATTGTTCAATAAGCACATGGGCAGTGCTACCGGGGCTGTCGGCGTCTTCACCTATGACCTTTTCAACCCCAACCTCAACGACTACAACCACATCATGGCTGTCATGTTCTGTGCCCTATGACTGAAACCTCTACTCCAACTGGTTTGCTGTGGGGATCCTTGACAGAGGATACATCTGTGACTACAATCTttatgatatgatgtataatgGAAATGAAAACCTCTACTCCAACTGGTTTGCTGTGGGGATCCTTGACAGAGGATACAACTGTGACTACGATCTttatgatatgatgtataatggatatgaaaataattttgtaaGAGGAAAGGCTGATGGCTCCTGCATTTCTTTTCAGGGTGATTATGCTATTGTCAGTGCTTCCATGTCAGACTCAGGTGAAGCAGTCCTGAGGGTGGATATCAGTGACATTGGCATGTATTAAGTCAGTAGGAGGAAGATCCTACTCTTGTTATGTAAGCCATATGAGCTGATCagtcattttaataaaatatttgagTATGTGTGAAGCTCAATCAACTGACACAGTTCATCACTAGCTGAAGTGGTGTTCATTAATGTACCTAAAATATGAGTACATTAAATAGTAGTTATTTCAGGTGTGATTTTAAAACGCTGATGCctaattacaaataaaaaacaagacTTGTATGTGTCCATCAAATTATGTCCTCTTTGTaagaaaataataacaaattcACTGTGTTCCTTCTGATACATAGAGATCTATTTGATACAGAACTGTTTCTGGATGTTTTGGTGCCCTACTCTGATTCTTACATTATCCAAGTTTCTGATTATCTGTGGAGGAGGCTATGTGACTCCTCCTAGATAGTCTTTGTCATTAATGCACTGTGGGGTATCTTACTTTCATTTGTGAATGTCCTCACCACATATTATCATCcaatatttattttgattttgattacTATTTCCCATGTTATATAACTGGCAGCACATAAGGCCTGTTGTGGGAGGATGTCAGGGCAGCATTTAGAGTATCCTCAAGTAGTTCATATTTATTACGTATGTATTCGGCATTACGTTTTACATGACTGTGGGAGGACACCGGAGCACCCGGAAAAATCGCAGACTTCTTTTAGGGCACATTCAGACCAAAGCAAGCGATTCGCTGCAGGGTTGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268185 lncRNA upstream 65563 29470012 ~ 29470956 (+) True G197571
TU268181 lncRNA upstream 78083 29457418 ~ 29458436 (+) True G197568
TU268134 lncRNA upstream 126532 29351706 ~ 29409987 (+) True G197532
TU268131 lncRNA upstream 153913 29332515 ~ 29382606 (+) True G197530
TU268142 lncRNA upstream 171033 29360009 ~ 29365486 (+) True G197537
TU268270 lncRNA downstream 85071 29704087 ~ 29705013 (+) True G197635
TU268271 lncRNA downstream 89727 29708743 ~ 29710005 (+) True G197636
TU268293 lncRNA downstream 149460 29768476 ~ 29779051 (+) True G197654
TU268320 lncRNA downstream 350774 29969790 ~ 29977939 (+) True G197679
TU268327 lncRNA downstream 375565 29994581 ~ 30000931 (+) True G197686
XM_039784348.1 mRNA upstream 359025 29112688 ~ 29177494 (+) False LOC120548242
XM_039784349.1 mRNA upstream 365560 29112688 ~ 29170959 (+) False LOC120548242
XM_039783802.1 mRNA upstream 682296 28817833 ~ 28854223 (+) True LOC120547961
XM_039784801.1 mRNA upstream 735143 28790787 ~ 28801376 (+) True si:dkey-187a12.4
XM_039784802.1 mRNA upstream 738883 28790784 ~ 28797636 (+) False si:dkey-187a12.4
XM_039783338.1 mRNA downstream 9715 29628731 ~ 29632761 (+) True LOC120547721
XM_039784340.1 mRNA downstream 27707 29646723 ~ 29655051 (+) True LOC120548236
XM_039783504.1 mRNA downstream 40396 29659412 ~ 29698143 (+) True pcca
XM_039783843.1 mRNA downstream 337704 29956720 ~ 29963090 (+) True cdt1
XM_039783187.1 mRNA downstream 534495 30153511 ~ 30201781 (+) True LOC120547658
TU268132 other upstream 186591 29348425 ~ 29349928 (+) True G197531
XR_005637159.1 other upstream 359025 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other upstream 421638 29112882 ~ 29114881 (+) False LOC120548242
XR_005637113.1 other upstream 2427379 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 2800732 26725759 ~ 26735787 (+) False tmem254
XR_005637093.1 other downstream 534495 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other downstream 534495 30153511 ~ 30201781 (+) False LOC120547658
TU268683 other downstream 1615348 31234364 ~ 31234723 (+) True G197999
TU268894 other downstream 3174272 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 3343372 32962388 ~ 32965074 (+) True G198245

Expression Profile