RNA id: TU268271



Basic Information


Item Value
RNA id TU268271
length 578
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G197636
representative True

Chromosome Information


Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 29708743 ~ 29710005 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AACCACTGGATGTTGGTGTGAGGCATTGACTCCAAGATGTAGTCCCATCTAGACGCCCAACGAATATTCTTGtcttcctacacacacacacacACATTTTCTTGGGGAAATACTGACTATTTCTGATAGCCCGAAGTTGAGTGCGTTCACTCTACTTCATCTTTTGTACCAATTATTGTAAATTACACTACAAATTTTGGTGCCCCGCTACAGAGAACAAAGTTGAAACAAGGCAGAGcacatgacaaaaacatggacaGCATTAAACACACCAGGACGATACTATTGTACTAACCACAAAGTTGATAGAGTAGGTGTATGGGATGTTGAACACtcccgtttgtttgtttttcaggaaCTTTGGCCCTCCAGTACAATCAGGGCTGTCATTAGGGTTTTCATAGctggacagagaaagagagacaaaagaaaTAGATCAAAGTAGCAAAGTCCACCAGTTATCTAATTTGCATATTGAGATCTAATTACAATACAGGCAGAATCTACAAGAACACTAATTAATACCACACTATTCAACTAGTCTGTGGACAGCATCATTAGTGTCCATAAAAAGTTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268270 lncRNA upstream 3730 29704087 ~ 29705013 (+) True G197635
TU268185 lncRNA upstream 237787 29470012 ~ 29470956 (+) True G197571
TU268181 lncRNA upstream 250307 29457418 ~ 29458436 (+) True G197568
TU268134 lncRNA upstream 298756 29351706 ~ 29409987 (+) True G197532
TU268142 lncRNA upstream 343257 29360009 ~ 29365486 (+) True G197537
TU268293 lncRNA downstream 58471 29768476 ~ 29779051 (+) True G197654
TU268320 lncRNA downstream 259785 29969790 ~ 29977939 (+) True G197679
TU268327 lncRNA downstream 284576 29994581 ~ 30000931 (+) True G197686
TU268337 lncRNA downstream 354765 30064770 ~ 30066529 (+) True G197695
TU268398 lncRNA downstream 419880 30129885 ~ 30130223 (+) True G197739
XM_039783504.1 mRNA upstream 10600 29659412 ~ 29698143 (+) True pcca
XM_039784340.1 mRNA upstream 53692 29646723 ~ 29655051 (+) True LOC120548236
XM_039783338.1 mRNA upstream 75982 29628731 ~ 29632761 (+) True LOC120547721
XM_039783503.1 mRNA upstream 150408 29557263 ~ 29558335 (+) True LOC120547808
XM_039783336.1 mRNA upstream 170101 29518941 ~ 29538642 (+) False LOC120547718
XM_039783843.1 mRNA downstream 246715 29956720 ~ 29963090 (+) True cdt1
XM_039783187.1 mRNA downstream 443506 30153511 ~ 30201781 (+) True LOC120547658
XM_039783188.1 mRNA downstream 443506 30153511 ~ 30201781 (+) False LOC120547658
XM_039783189.1 mRNA downstream 443506 30153511 ~ 30200199 (+) False LOC120547658
XM_039783190.1 mRNA downstream 443506 30153511 ~ 30190610 (+) False LOC120547658
TU268204 other upstream 89727 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other upstream 111918 29595292 ~ 29596825 (+) False LOC120547718
TU268132 other upstream 358815 29348425 ~ 29349928 (+) True G197531
XR_005637159.1 other upstream 531249 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other upstream 593862 29112882 ~ 29114881 (+) False LOC120548242
XR_005637093.1 other downstream 443506 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other downstream 443506 30153511 ~ 30201781 (+) False LOC120547658
TU268683 other downstream 1524359 31234364 ~ 31234723 (+) True G197999
TU268894 other downstream 3083283 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 3252383 32962388 ~ 32965074 (+) True G198245

Expression Profile