RNA id: TU268472


Basic Information

Item Value
RNA id TU268472
length 2614
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G197804
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 30341337 ~ 30344038 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGTGTTTTTACATTGAAGAGAAGGCCACCATAGATTCTCCTACACGCTCGGTGAGGGTATTCAGTAGGTTGCTAGCTGCAACCTCACTGCTAGACGCCattaaatcctacacactggtcCTTCCATTAAACATATTCAATATTTTCGGTAATGTTTGTCTTTCAACATGAAGGTCAtgatcaggggtgtcaaactatCGGCCCAAGAGCCAGATCCTGCATGTCAAACAATTTTATAGGGTTCCActtcatacatttatttttacatctgGCTCACAAATTCAGAGAGGTTGACTTTGCGGACAGACAGTTACAAGAGGAGGATGCTCTCCCTAGCTAATTTGGGTTTGCGGCCCCTGGTCTAAATGCTGATTCAAAGCCTTCTCTATTGCCAGGAATATCATTATAAATAGAAGAAAGTAAGTCTTTTTTatcttcatttattttattggctTTAAAGTATTCCAAATTAACtgtattcaatttttttttaattgtggaAACAGTCAAATCAATAGCAACCCAATGTAATTTTGTTCACGGTTGCTAAGTCTCCAAATTTCAAACTAACACAGACGACAGCTGCAGCAGCCCTGCTTCTACAACTTAGatacaataacaaaaaaggACAATAAAGTGATTAGGTGATGTTTATCAAACACATTTTCTATTCTTGGCAGTTTTTCGATCAAAGAAATGCATTCATAAAATTGAAATTAAGACCACAAACGGCGCAGAGAATCGAAAATAAAGCTCTGAGGCACTGATGAGTAACACACATTCAACCTTAAACTAACTTGTTATAAACAGTTTGTATGGAAGCACGACAACATGTTGTATAATGGTAGATTAAAGTGTTGATGATAAAGAgcagttggggaaaaaaaggttaACTACTACATTTAACATAAAGCAACCGATGAAAGCTTCCCCATAAACTCAACACATACGGAGGGATCTTAATGAGTGGATTCACTCAGAGTTCAActttggcacacacacacacacacacacacacacacacacacacacacacaaccaatagCAAAGATGCTTTCATGTTGTTGACCTCTAACTGTAGAGTCCAAAATGCAAAATGGAGGGAGACATGTCTTcagttaaataaaattaatcacTGTGGCAGAATACAAACTGCAAAGCAGACACCTTTGACATGGTTTGCACTCAGTTGTCACACAGGAGTAGATGGTACAACTGTGGGCTTATATTATGTTGGCTGTGAAGCTATCTTGATAGCTAATTTCTGGGGCTGGTTGCACAAAgacatctaaaaaaaacattcccatctAAATCTGTTCTGAGTGATTTGAAAAGTGGACAGGTTGGCAATGCACCCAGGATGCATTGAAATCTGATCACTGAAACCACATTTGGAGGTAGCAAttctgtatcgatacacagacgccaagtatcgatctattattatatatgtgttggtgtTTTTCTGCTtcacaatcccattttgcagcaataacatTGATAGGAGATGAACAGACGAAGAcatttatcttttcttttttttttaaagatttattttgggggcttttcccttaattatagtgacagtggatagacatgaaagggggagagagaagggggatgacacgcagcaaagtgCCGaaggttggattcgaacccgggccactgcaggactcagccaacatggggctcTTAACTgtgtgagctagaggccgccccagacATTTATCTtttaagataaaacagatgttgacaaagtttccttttggggacatcatttaaaattgggaaaaatttaaagttggaaaaaaggtaataaattgcaatatgtttaaaatagcAGTAATATCGTATcgcgatgatatcgtatcgtgaggcctctggtgattcccacccctaaggTAGACAGGTCTTGTTTTGCTCCGACTAATGCAAACAGATGCACGTCTTCCAGCAGTCTGTTCATATTTCGTTGTTTGGCGTTGTGCAGTGCACATTAGCACACCAGCTAGAATTTGGGGGTCGTTTTAAactaaagtattggacaaattgaaGAGTGATTTTGATTCATCCTCAGGGCGACAATAATatgtgtaccaaatttcataaCAATTCAACCATCCAGTTATATGTATTTTACGAACGAGTAAAAGTATAACATTAGACATCTTAAGTTGAAGTATTTGTTTGATCAGAGCCAAAGGCGTTGTGCAACCAGCCCTAGCTACTGCCTAATCACACTAACAAACAGAGTTTTTTTAATCTAACGTCTCCAGTTTTTTGTCTTTAGGATAACAAATATCTTTGTTCTCTTCCTTGGAGGAAAAGCACTTTCTCACAATGTCCACCTTTTTTACCCATGTTGATTGTATTAATATGCAGAAGCGGTTTAGTTTATGGGATGGTGAGCGGGGGGGTGCCGTTATGGTGGATACTGCAGCTTTGTTCCAGAGAAGCTTTCAGTCGAGTTACTCCTGCTTGACATCTCCGGTCAGCTTCCTCTTGACTCGAGAGTACGGGCTCAGTGCATCGTCCATGATGAAGTCGAACAGGACCTTCAGCCACGATGTATACTGAGGCAGGTCATCATAATACTCTGCTGCTATCTTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268471 lncRNA upstream 2125 30338776 ~ 30339212 (+) True G197803
TU268421 lncRNA upstream 171426 30169444 ~ 30169911 (+) True G197761
XR_005637092.1 lncRNA upstream 190621 30146823 ~ 30150716 (+) True LOC120547657
XR_005637091.1 lncRNA upstream 190621 30146823 ~ 30150716 (+) False LOC120547657
TU268398 lncRNA upstream 211114 30129885 ~ 30130223 (+) True G197739
TU268519 lncRNA downstream 53029 30397067 ~ 30397289 (+) True G197843
TU268521 lncRNA downstream 67870 30411908 ~ 30412212 (+) True G197845
TU268523 lncRNA downstream 68879 30412917 ~ 30413144 (+) True G197847
XR_005637155.1 lncRNA downstream 86562 30430600 ~ 30437159 (+) True LOC120548213
TU268533 lncRNA downstream 93248 30437286 ~ 30438374 (+) True G197856
XM_039783506.1 mRNA upstream 5177 30267788 ~ 30336160 (+) True nvl
XM_039783188.1 mRNA upstream 139556 30153511 ~ 30201781 (+) False LOC120547658
XM_039783833.1 mRNA downstream 162016 30506054 ~ 30600609 (+) False sertad2b
XM_039783832.1 mRNA downstream 162016 30506054 ~ 30600609 (+) False sertad2b
XM_039783829.1 mRNA downstream 162016 30506054 ~ 30600609 (+) False sertad2b
XM_039783831.1 mRNA downstream 223637 30567675 ~ 30600609 (+) True sertad2b
XM_039783830.1 mRNA downstream 223637 30567675 ~ 30600609 (+) False sertad2b
XR_005637093.1 other upstream 139517 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other upstream 139556 30153511 ~ 30201781 (+) False LOC120547658
TU268204 other upstream 722321 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other upstream 744512 29595292 ~ 29596825 (+) False LOC120547718
TU268132 other upstream 991409 29348425 ~ 29349928 (+) True G197531
TU268683 other downstream 890326 31234364 ~ 31234723 (+) True G197999
TU268894 other downstream 2449250 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 2618350 32962388 ~ 32965074 (+) True G198245
unassigned_transcript_1124 other downstream 3358248 33702286 ~ 33702357 (+) True trnaw-cca_27
XR_005637201.1 other downstream 4530412 34874450 ~ 34874577 (+) True LOC120548589

Expression Profile