RNA id: TU268562


Basic Information

Item Value
RNA id TU268562
length 222
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G197885
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 30483208 ~ 30483429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCTTAATGGAGGCTAGAATATAATTGTTGATCACAATAAATACGGGCTCACGGCTGTGgtctaaacccaacaggaagtctgccATTTTTAATTGAAAGTTGGAAATTAGTGAGATTTACATCCGAttgacttcaaatttggtctgtgccatcttaagaccttagagatgaaaagttattaaaagaaaaacttttcgtcatagggcctGGCTGTGgtgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268560 lncRNA upstream 795 30482132 ~ 30482413 (+) True G197883
TU268554 lncRNA upstream 5634 30477340 ~ 30477574 (+) True G197877
TU268544 lncRNA upstream 23760 30458672 ~ 30459448 (+) True G197867
TU268542 lncRNA upstream 27979 30454831 ~ 30455229 (+) True G197865
TU268541 lncRNA upstream 28540 30454461 ~ 30454668 (+) True G197864
TU268564 lncRNA downstream 3686 30487115 ~ 30487413 (+) True G197887
TU268566 lncRNA downstream 4821 30488250 ~ 30488558 (+) True G197889
TU268586 lncRNA downstream 162974 30646403 ~ 30647320 (+) True G197909
TU268531 lncRNA downstream 190783 30674212 ~ 30674482 (+) True G197854
TU268641 lncRNA downstream 466931 30950360 ~ 30954271 (+) True G197958
XM_039783506.1 mRNA upstream 147048 30267788 ~ 30336160 (+) True nvl
XM_039783188.1 mRNA upstream 281427 30153511 ~ 30201781 (+) False LOC120547658
XM_039783833.1 mRNA downstream 22625 30506054 ~ 30600609 (+) False sertad2b
XM_039783832.1 mRNA downstream 22625 30506054 ~ 30600609 (+) False sertad2b
XM_039783829.1 mRNA downstream 22625 30506054 ~ 30600609 (+) False sertad2b
XM_039783831.1 mRNA downstream 84246 30567675 ~ 30600609 (+) True sertad2b
XM_039783830.1 mRNA downstream 84246 30567675 ~ 30600609 (+) False sertad2b
XR_005637093.1 other upstream 281388 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other upstream 281427 30153511 ~ 30201781 (+) False LOC120547658
TU268204 other upstream 864192 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other upstream 886383 29595292 ~ 29596825 (+) False LOC120547718
TU268132 other upstream 1133280 29348425 ~ 29349928 (+) True G197531
TU268683 other downstream 750935 31234364 ~ 31234723 (+) True G197999
TU268894 other downstream 2309859 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 2478959 32962388 ~ 32965074 (+) True G198245
unassigned_transcript_1124 other downstream 3218857 33702286 ~ 33702357 (+) True trnaw-cca_27
XR_005637201.1 other downstream 4391021 34874450 ~ 34874577 (+) True LOC120548589

Expression Profile