RNA id: TU268586


Basic Information

Item Value
RNA id TU268586
length 259
lncRNA type intronic
GC content 0.46
exon number 2
gene id G197909
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 30646403 ~ 30647320 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtggaacggatcgggtactgacagataTAGCAAAGTTTTTATACGGAACAGGAACACTAGTAACAGACCTCACCGGCCGGAGAGTGATTCAGAAGCAGCGTCAGACGAACCGCGGACAAGTGTTGCAGGATTATCAGAAGTGCTGTCGCTCTTCTTCCACTCGACACCATCACTACCCTCCTCACCTGGCCTTCATCCTCACCTGTATTGCTTTCTTTCTAAGTTTCTATTTGAACTGTTAAGGATCATTTTTGTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268566 lncRNA upstream 157845 30488250 ~ 30488558 (+) True G197889
TU268564 lncRNA upstream 158990 30487115 ~ 30487413 (+) True G197887
TU268562 lncRNA upstream 162974 30483208 ~ 30483429 (+) True G197885
TU268560 lncRNA upstream 163990 30482132 ~ 30482413 (+) True G197883
TU268554 lncRNA upstream 168829 30477340 ~ 30477574 (+) True G197877
TU268531 lncRNA downstream 26892 30674212 ~ 30674482 (+) True G197854
TU268641 lncRNA downstream 303040 30950360 ~ 30954271 (+) True G197958
TU268665 lncRNA downstream 551635 31198955 ~ 31200000 (+) True G197982
TU268666 lncRNA downstream 553536 31200856 ~ 31202473 (+) True G197983
TU268674 lncRNA downstream 558771 31206091 ~ 31206356 (+) True G197991
XM_039783833.1 mRNA upstream 45794 30506054 ~ 30600609 (+) False sertad2b
XM_039783832.1 mRNA upstream 45794 30506054 ~ 30600609 (+) False sertad2b
XM_039783829.1 mRNA upstream 45794 30506054 ~ 30600609 (+) False sertad2b
XM_039783831.1 mRNA upstream 45794 30567675 ~ 30600609 (+) True sertad2b
XM_039783830.1 mRNA upstream 45794 30567675 ~ 30600609 (+) False sertad2b
XM_039784116.1 mRNA downstream 64253 30711573 ~ 31005023 (+) True LOC120548109
XM_039784117.1 mRNA downstream 64253 30711573 ~ 31005023 (+) False LOC120548109
XM_039784893.1 mRNA downstream 536000 31183320 ~ 31198691 (+) True ogfrl1
XM_039783784.1 mRNA downstream 695639 31342959 ~ 31493220 (+) False LOC120547952
XM_039783783.1 mRNA downstream 695640 31342960 ~ 31493220 (+) True LOC120547952
XR_005637093.1 other upstream 444583 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other upstream 444622 30153511 ~ 30201781 (+) False LOC120547658
TU268204 other upstream 1027387 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other upstream 1049578 29595292 ~ 29596825 (+) False LOC120547718
TU268132 other upstream 1296475 29348425 ~ 29349928 (+) True G197531
TU268683 other downstream 587044 31234364 ~ 31234723 (+) True G197999
TU268894 other downstream 2145968 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 2315068 32962388 ~ 32965074 (+) True G198245
unassigned_transcript_1124 other downstream 3054966 33702286 ~ 33702357 (+) True trnaw-cca_27
XR_005637201.1 other downstream 4227130 34874450 ~ 34874577 (+) True LOC120548589

Expression Profile