RNA id: TU268666


Basic Information

Item Value
RNA id TU268666
length 1492
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G197983
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 31200856 ~ 31202473 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCGGttatctgtaaaataaaacacagatacagatgatCTTCAAATTGCCATATATTGGCCCCGATAATCCGCCAGGCCGATAATTGGTCGATCCCTACACATTGCGATACAAAAATTCCAAAAATGTTAAGCTCCTTTACATCTATGTGATGCACACTGTAGTCAAGCCTCTCAAAATACAACACAGAcatgagccccgtctctgtgcgtaacggAGAGGTTTTCCTGTGTCTCTACGacgtaacgttagacagccaatcacaagcaatattagatcttggtagaagcatgctgcttgcttattggctcactgactgatgagatttactcctccTGCATTGAAATTGGGtgttgaatgacgaggcatttttttgaTACTCTAcactaaggaggcaattcggtTGGTGCCTAAAAGGTATCGTCGTTAGGGACCCAGCCTTATTGAATACGACAGTTAAAAGCTGCAAAGTTTGTGCAGCTGCtgatatttttgtcagatttttaaCATAACGTTACataacttaacaaaaaaaagtccCCTAGAGCTGTACTTTAATGAGTCTGCAGGAGTCACTTAATTAACACGTAGAACGCTACActgaattataattttttttagagTTAGCAGCTGCTTAAGGAAGTGAAGTAGATTTGACACTCACCTCTGAgatgttgttaaaaaaacatatcaTCACCCTCAACATGCTGTATCCGAAGTTGACAGCATCACTCTGTTAGTGTTAAATCGAAGGCCAATATCAGCCTGACACGGCAGGGAGTGTGTATTAAGCCGTCCAGTCAGCCAGTAGGGACTCGGCAGTGTTAGGGCAACTTTGTGCAACTTTGTTCAATTCTAGGAATCATTTCAAGCAGACATTTGAGTTCTTGGTTGCAATAGACAGATATCTGTGAAATAAAAAGTAAGCCATGCGAGGTGTAAGACAACGATGATGCATAGGATCGGGGATTTAAACACTCCTTCCTGACTTCCTGTCAGCTGTTCTTCCTGTAGGATAAGGCCTTGTTTATCATTAGCCAAGTGTATCTGATATAATTGTAAAAATAACTTTTCAGGTGAATTGTGTGACAACATGGGCTCAAGTATCTgaattatagtgtgtgtgtgtgtgtgtgtgtgtgatattcTTAAGtgccttttttgtatttttttgtttatctgtATGATGTCGTTCCCAACTGATTTCCTGTACATCCTGgtttttgtacagcattttgatATTTACATTATTGTTTGCATTATAGTATGAGTATTAATGTACAGTAACAGCAGGAATAACTCCCATAATAATTGGTATAGAGGAGaagtaaataatataataacacttGAAATAGTATATATCTGGCCTATtgattaaaatgtgattttccATTGATGAATATTCACTATGCTTGCTGATGGGCCACAATAATGGGATATTTGCCCTAAAATGTGAAATTTGCCACACTTACCTAATTTAAATAAAGCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268665 lncRNA upstream 856 31198955 ~ 31200000 (+) True G197982
TU268641 lncRNA upstream 246585 30950360 ~ 30954271 (+) True G197958
TU268531 lncRNA upstream 526374 30674212 ~ 30674482 (+) True G197854
TU268586 lncRNA upstream 553536 30646403 ~ 30647320 (+) True G197909
TU268566 lncRNA upstream 712298 30488250 ~ 30488558 (+) True G197889
TU268674 lncRNA downstream 3618 31206091 ~ 31206356 (+) True G197991
TU268686 lncRNA downstream 38472 31240945 ~ 31242282 (+) True G198002
TU268688 lncRNA downstream 48916 31251389 ~ 31251871 (+) True G198004
XR_005637122.1 lncRNA downstream 207050 31409523 ~ 31412035 (+) True LOC120547953
TU268785 lncRNA downstream 422535 31625008 ~ 31625225 (+) True G198082
XM_039784893.1 mRNA upstream 2165 31183320 ~ 31198691 (+) True ogfrl1
XM_039784116.1 mRNA upstream 195833 30711573 ~ 31005023 (+) True LOC120548109
XM_039784117.1 mRNA upstream 195833 30711573 ~ 31005023 (+) False LOC120548109
XM_039784239.1 mRNA upstream 529672 30625630 ~ 30671184 (+) True slc1a4
XM_039783784.1 mRNA downstream 140486 31342959 ~ 31493220 (+) False LOC120547952
XM_039783783.1 mRNA downstream 140487 31342960 ~ 31493220 (+) True LOC120547952
XM_039784235.1 mRNA downstream 310391 31512864 ~ 31573621 (+) True bcl11aa
XM_039784236.1 mRNA downstream 310391 31512864 ~ 31573621 (+) False bcl11aa
XM_039783866.1 mRNA downstream 1242614 32445087 ~ 32483666 (+) True fancl
XR_005637093.1 other upstream 999036 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other upstream 999075 30153511 ~ 30201781 (+) False LOC120547658
TU268204 other upstream 1581840 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other upstream 1604031 29595292 ~ 29596825 (+) False LOC120547718
TU268132 other upstream 1850928 29348425 ~ 29349928 (+) True G197531
TU268683 other downstream 31891 31234364 ~ 31234723 (+) True G197999
TU268894 other downstream 1590815 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 1759915 32962388 ~ 32965074 (+) True G198245
unassigned_transcript_1124 other downstream 2499813 33702286 ~ 33702357 (+) True trnaw-cca_27
XR_005637201.1 other downstream 3671977 34874450 ~ 34874577 (+) True LOC120548589

Expression Profile