RNA id: TU269280


Basic Information

Item Value
RNA id TU269280
length 253
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G198520
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 33977930 ~ 33978182 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagatagtctagctagctgtctgtcagCTGAATAGAGTTGGTCTGTGCCCATATATTTCTTTTGAATTAAATTGTTAATTAAATATTCACATAAATGATCAGTGGCTGATATGAGATTTTTGGACCAGCAGCAATGAACACATACATTTCAATTCATGTTCAAATGCGTCCTCATATGACAAAACAGGACATCCAACTGGATGTAAATGTAAATCACAcaactttatttattaaatttttttgtgcTAGGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637108.1 lncRNA upstream 56285 33920712 ~ 33921645 (+) True LOC120547847
TU269268 lncRNA upstream 56734 33920679 ~ 33921196 (+) False LOC120547847
TU269264 lncRNA upstream 78753 33895870 ~ 33899177 (+) True G198505
TU269243 lncRNA upstream 126019 33851677 ~ 33851911 (+) True G198488
TU269114 lncRNA upstream 260979 33716697 ~ 33716951 (+) True G198369
TU269283 lncRNA downstream 28641 34006823 ~ 34008003 (+) False si:ch211-51a6.2
TU269295 lncRNA downstream 33302 34011484 ~ 34011791 (+) False G198533
TU269297 lncRNA downstream 33302 34011484 ~ 34012017 (+) True G198533
TU269299 lncRNA downstream 34665 34012847 ~ 34013380 (+) True G198534
TU269301 lncRNA downstream 37921 34016103 ~ 34016368 (+) True G198536
XM_039784669.1 mRNA upstream 1387 33970538 ~ 33976543 (+) True chchd1
XM_039783975.1 mRNA upstream 240938 33719799 ~ 33736992 (+) True ctu2
XM_039783344.1 mRNA upstream 470448 33480401 ~ 33507482 (+) True LOC120547725
XM_039783340.1 mRNA upstream 513321 33425351 ~ 33464609 (+) True nt5c2a
XM_039784489.1 mRNA downstream 3329 33981511 ~ 34007361 (+) False si:ch211-51a6.2
XM_039784488.1 mRNA downstream 3329 33981511 ~ 34007361 (+) True si:ch211-51a6.2
XM_039784490.1 mRNA downstream 3329 33981511 ~ 34007361 (+) False si:ch211-51a6.2
XM_039783495.1 mRNA downstream 40195 34018377 ~ 34082623 (+) True zswim8
XM_039783646.1 mRNA downstream 113955 34092137 ~ 34124873 (+) True ndst2a
unassigned_transcript_1124 other upstream 275573 33702286 ~ 33702357 (+) True trnaw-cca_27
TU268961 other upstream 1012856 32962388 ~ 32965074 (+) True G198245
TU268894 other upstream 1183269 32793288 ~ 32794661 (+) True G198185
TU268683 other upstream 2743207 31234364 ~ 31234723 (+) True G197999
XR_005637094.1 other upstream 3776149 30153511 ~ 30201781 (+) False LOC120547658
XR_005637201.1 other downstream 896268 34874450 ~ 34874577 (+) True LOC120548589
TU269549 other downstream 966090 34944272 ~ 34948428 (+) False LOC120548523

Expression Profile