RNA id: TU269301


Basic Information

Item Value
RNA id TU269301
length 266
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G198536
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 34016103 ~ 34016368 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcatactctgcttctgactggctagtagtccttacctaggtactctcagggcacgccctcatactctgcttctgactggctagtagtccttacctaggtactctcagggcacgccctcatactctgcttctgactggctagtagtccttacctagctactgtgcatgtgcgactcccaacaaagatgaacagaagtgagatgtctcactctgtagctaaaacagagagctcaacacacagggtgaaaagaggagctgcagcaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269299 lncRNA upstream 2723 34012847 ~ 34013380 (+) True G198534
TU269297 lncRNA upstream 4086 34011484 ~ 34012017 (+) True G198533
TU269295 lncRNA upstream 4312 34011484 ~ 34011791 (+) False G198533
TU269283 lncRNA upstream 8100 34006823 ~ 34008003 (+) False si:ch211-51a6.2
TU269280 lncRNA upstream 37921 33977930 ~ 33978182 (+) True G198520
TU269386 lncRNA downstream 181894 34198262 ~ 34199378 (+) True G198603
TU269389 lncRNA downstream 252634 34269002 ~ 34269316 (+) True G198606
TU269420 lncRNA downstream 479368 34495736 ~ 34496250 (+) True G198635
TU269452 lncRNA downstream 576229 34592597 ~ 34593089 (+) True G198654
XR_005637077.1 lncRNA downstream 582171 34598539 ~ 34604373 (+) True LOC120547565
XM_039784489.1 mRNA upstream 8742 33981511 ~ 34007361 (+) False si:ch211-51a6.2
XM_039784488.1 mRNA upstream 8742 33981511 ~ 34007361 (+) True si:ch211-51a6.2
XM_039784490.1 mRNA upstream 8742 33981511 ~ 34007361 (+) False si:ch211-51a6.2
XM_039784669.1 mRNA upstream 39560 33970538 ~ 33976543 (+) True chchd1
XM_039783975.1 mRNA upstream 279111 33719799 ~ 33736992 (+) True ctu2
XM_039783495.1 mRNA downstream 2009 34018377 ~ 34082623 (+) True zswim8
XM_039783646.1 mRNA downstream 75769 34092137 ~ 34124873 (+) True ndst2a
XM_039783649.1 mRNA downstream 75769 34092137 ~ 34124873 (+) False ndst2a
XM_039783648.1 mRNA downstream 75769 34092137 ~ 34124873 (+) False ndst2a
XM_039783650.1 mRNA downstream 113635 34130003 ~ 34138259 (+) True si:dkey-191g9.7
unassigned_transcript_1124 other upstream 313746 33702286 ~ 33702357 (+) True trnaw-cca_27
TU268961 other upstream 1051029 32962388 ~ 32965074 (+) True G198245
TU268894 other upstream 1221442 32793288 ~ 32794661 (+) True G198185
TU268683 other upstream 2781380 31234364 ~ 31234723 (+) True G197999
XR_005637094.1 other upstream 3814322 30153511 ~ 30201781 (+) False LOC120547658
XR_005637201.1 other downstream 858082 34874450 ~ 34874577 (+) True LOC120548589
TU269549 other downstream 927904 34944272 ~ 34948428 (+) False LOC120548523

Expression Profile