RNA id: XM_039783000.1


Basic Information

Item Value
RNA id XM_039783000.1
length 1677
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120547537
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26865625 ~ 26873668 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATGAACCTCAGTGAATTCCACAATCTCATTAGGAAATGGATGGGGTGGTGCCTGATcactgagggggaaaaaaagatgttGTCTTCAATATCACTCACACTAGAAACAGAGGAGTAAAATGCCAATGCAAAAAGACACTTGAACCCGGGACCCACCCTGAACAATGGTCTATATGtacactagctagctaaacaTCTCAGCACCACCTCTACAATGTCTTCcccagagagggaggaaaatgTTCCTGACCTGCAGCTAAGTTTTGTCTTTGGGAACAGTGTTGTCAATTCTCAATTCATTCTGCCCGAGGATGCAGAGGCACAGGAGCAACCTGAATATGACTTAACAGAGACATTATGTCTGAGCAGAACTCAGCTGAAACACGTTGCAGACAGTATTTTGAAAAATAGCACACTAAAGTATTTATATCTCGAAGGCAACCACATATCCAGTATCCCAGATTCAATGTTCATCAGCTTGCCCAACCTCCTGTGGCTGGACCTCAGAAATAACCAAATTGCATCGCTCCCTGCTGAAGTTGGCTTGCACAGATCTCTGAAAACAATACTTCTGGAAGGAAACCCCATCTCAGAACTTCCACCAGAGTTGGGAAATGTGATTACCCTCAAAGGCTTGAACCTAAGGAATTGCCCCATCAGTTTCCCTCCACAAGACATTGTGAACCAGGGACTCCAGAGGATCCTCCAGTACCTCAGGAGTGCGATGGCTAGTCGGCCCGTTAGCATGAGAAGGAGCCCCTCAGAGTTGCCAGTGGTGGAGAAGCTCCAGCTGTCAGAGCTGATGGGGTCCAGTACGGAGGAGCAGGATGATTCAGGTGACGAGCTGCAGAAGTTCATGGAGCTCAAACACAAGATGTTCCTGCTGGACAAAGCTGAGCTGGGCTCAACAGCACAGGGTGATATAACCCCAAAGTCACACCGCCTTTCTGTTATCCAAAAAAAAAAGGCAACTACCAAGGCTGGCATAATTCCCGAGCCCCCCCTGTTTGACACTCGGCATTGGAAGAGGCCAGAAGACAGGAAACAGGCTGCAATGAAAGAGCTGAAGGAGAAACAGGCTATTCTCGAGCAGAGAAAAAAAAGCCAAGACACTCTTCGGAAGTGGCGTACACAAGCCATGACCACACGGGGGAAGAACATGTCTCAACACCAGCAGAGGAAGCATGCACAACAAAGAAACCAAGAGGAAGCGGACACAAATTCAAAAGCTGGTGTGGAGGACAGCGGTGATACTCGCCAGGGTCAGACGTCCTGCGTGTCTATCAAAGATTGTGAGGAGACCAGGTCAGCCCGTGAGCTGGAGCGCCAGATACGCTCACGTGTCGAGAAGATGCAAGAGAGACGCAGGAATCCCAGGGGCACGAGCACAGAGCAGATGGCAGCGTCAGAGCAAGATGTGGAGGAGATGAGGAAGCTACAGGCTCGCCTTCTAGAGAGGAAGCGTAATCGAGGAAGAGATCGTGAAAATAGTTTCAATATCTTCACAGCAGACACCTGGCCGAGTTTCATTGACAAGtaacagaaattacaatgtcTGTTTGAGTTCTGCTGTATTAAATTCATACTCAAAATTCTTGTAAAGGCCTTTATGAATGACCATTGTAATGCTCatatcataaaataaaaaccacagtGCTGTTACTGGGCAAGGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267570 lncRNA upstream 119723 26740257 ~ 26746085 (+) True G197069
TU267571 lncRNA upstream 122661 26740257 ~ 26743147 (+) False G197069
TU267520 lncRNA upstream 238106 26624635 ~ 26627702 (+) True G197035
TU267521 lncRNA upstream 239027 26624635 ~ 26626781 (+) False G197035
TU267513 lncRNA upstream 325673 26539844 ~ 26540135 (+) True G197029
TU267581 lncRNA downstream 10651 26884319 ~ 26953805 (+) False pwwp2b
TU267596 lncRNA downstream 191058 27064726 ~ 27104508 (+) True G197084
TU267599 lncRNA downstream 242298 27115966 ~ 27116514 (+) True G197087
TU267601 lncRNA downstream 268903 27142571 ~ 27142786 (+) True G197089
TU267660 lncRNA downstream 391611 27265279 ~ 27265508 (+) True G197137
XM_039783258.1 mRNA upstream 98470 26758333 ~ 26767338 (+) True LOC120547700
XM_039784776.1 mRNA upstream 130034 26725716 ~ 26735774 (+) True tmem254
XM_039784276.1 mRNA upstream 243238 26619417 ~ 26622570 (+) True mcfd2
XM_039784275.1 mRNA upstream 243238 26619422 ~ 26622570 (+) False mcfd2
XM_039783202.1 mRNA upstream 317048 26535284 ~ 26548760 (+) True stpg4
XM_039784217.1 mRNA downstream 547 26874215 ~ 26884434 (+) False pwwp2b
XM_039784218.1 mRNA downstream 549 26874217 ~ 26884434 (+) True pwwp2b
XM_039783660.1 mRNA downstream 52750 26926418 ~ 27099723 (+) True LOC120547882
XM_039783659.1 mRNA downstream 52750 26926418 ~ 27099723 (+) False LOC120547882
XM_039784914.1 mRNA downstream 303300 27176968 ~ 27206666 (+) True valopa
TU267563 other upstream 130021 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 202023 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 882970 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 1041131 25817251 ~ 25824677 (+) False LOC120548053
TU267128 other upstream 1245133 25613407 ~ 25620675 (+) True prdx3
XR_005637113.1 other downstream 52750 26926418 ~ 27109140 (+) False LOC120547882
XR_005637159.1 other downstream 2239020 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 2239214 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 2474757 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 2662851 29536519 ~ 29619016 (+) True LOC120547718

Expression Profile