RNA id: XM_039783067.1


Basic Information

Item Value
RNA id XM_039783067.1
length 1667
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120547587
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 23337381 ~ 23351721 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTTATCTTCTGGAGGGAGGGGAATAAAGGTGTGTTTTAGTGTTCAcagtttataatatatattgttGCACCCCGCACCGAGTTAGTTTTTTCTGTAGCGATAACTCCGATCTTTTTCTATGAAATAAAGCTCTTATATTCCACCATCTCAGTCTCCTGATAATTCATTGATTCATCTTCGGCATCTGAAAGTTTTCGACAGACTGGCGTGTACGAACACAATCGGAAAAGAGCCAATCGGGCAACTGGACAGCTGCACGACTGGGAGAGGGGACTACAGAAGCCTTTTTTTCACACAGAAAGAATAAGATTTTTGCAAACTTGAAGCAATGGATGGTGACTCAGAAGCCGTCACTGAGCAAATTTTGCTGAAACCATACAAGTACTTGTTGCAATTACAAGGAAAGAACGTGAGGACAAAACTATCCCAAGCATTTAACCACTGGCTCAATATTCCAGAGGACAAACTGCAGGTGATCATCCAGGTGACTGATGTGCTGCACAACGCCAGCTTGCTCATAGACGACATCGAGGACAGCTCCAAGCTGCGGCGAGGCTTCCCTGTGGCCCACAGCATCTATGGCATTCCCTCCGTTATCAACACGGCCAACTACGTCTACTTCCTGGGGTTAGAGAAGGTGCTGACCCTGGAGCACCCTGAGGCTGTCCGAGTGTTTACCCGGCAGCTGCTGGAGCTACACCGTGGTCAGGGTCTGGACATCCACTGGAGGGACACCTACACCTGTCCCACTGAGCAGGAGTACCGCAACATGGTGCTACAGAAAACTGGGGGGCTCTTTGGTCTGGCTGTGATCCTGATGCAGCTCTTCTCAGATTGGAAACAGGACCTGAAACCCCTTCTGGACACACTGGGCCTCTTCTTCCAGATCCGCGACGACTACGCCAACCTGACCTCTCGTGAGTACAGCGAGAACAAGAGCTTCTGTGAGGACCTGACTGAGGGAAAGTTCTCTTTCCCCACCATTCACGCCATATGGTCGTGTCCAGAGAGCACTCAGGTGCAGGACATCCTGAGGAAGCGCACAGAAATCATGGAAATCAAACaatactgtgtggactaccTGGAGAAGGTCGGCTCGTTTGCCTACACCCGTCAGACTCTGCGAGACCTGGAGGAGGAGGTCTACCGTCTCATCGGGGAGTTTGGGGGAAACCCTCAACTGGAGAGCCTCGTCAAACACCTCAGCCAAATGCATCGTGAGGCTGAAGCCGCAGCAGAGTCCAGTACTGAGCCACACTCCAACCAAAACCACTGACCTCATCCACCATAACTAACATACTAGTCCTTCACACTCCACTAAATAAAGTAAGATGTCTTAAGTGTATGATGTGTGATTTGGGGATCCTTAATCATTAAGCTGCCATTAAGAGTGCCAATCCCGTAGAAAAGACCTCTGCAACTCAACTGCCTACTTGTACAATAACATGCTGGCATTGTATGCAAAGTAGTGCTCATGCTGTTTATGCTCAGCTGTACATAAAAacttttgttttagtttattgCAGACTGCGTTTCCATCTGGTTCAGATTCACATCTCTAATGTTTTATTAGGGTGATTCAGTTGTGATATTTGTAAGTAGCAGACACTGTGCTGCAGTTATGAACTTCTTTTTATtcgtgaattaaaaaaaaactacatttca

Function

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00804 GGPS1; geranylgeranyl diphosphate synthase, type III

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266291 lncRNA upstream 76326 23258136 ~ 23261055 (+) True G196124
TU266278 lncRNA upstream 147225 23189600 ~ 23190156 (+) True G196111
TU266210 lncRNA upstream 189746 23146812 ~ 23147635 (+) True G196057
TU266188 lncRNA upstream 192729 23136446 ~ 23144652 (+) True G196036
TU266168 lncRNA upstream 302590 23032452 ~ 23034791 (+) True G196028
TU266309 lncRNA downstream 2251 23353972 ~ 23354341 (+) True G196140
TU266347 lncRNA downstream 115573 23467294 ~ 23470444 (+) True G196174
TU266365 lncRNA downstream 145447 23497168 ~ 23533059 (+) True G196184
TU266377 lncRNA downstream 191886 23543607 ~ 23543838 (+) True G196195
TU266482 lncRNA downstream 247487 23599208 ~ 23611337 (+) True disc1
XM_039783066.1 mRNA upstream 18345 23303204 ~ 23319036 (+) True LOC120547586
XM_039783053.1 mRNA upstream 211283 23112659 ~ 23126098 (+) True LOC120547578
XM_039783054.1 mRNA upstream 211283 23112659 ~ 23126098 (+) False LOC120547578
XM_039783055.1 mRNA upstream 226810 23099921 ~ 23110571 (+) True LOC120547579
XM_039783056.1 mRNA upstream 231592 23099915 ~ 23105789 (+) False LOC120547579
XM_039783541.1 mRNA downstream 136513 23488234 ~ 23494167 (+) True gpr137ba
XM_039783543.1 mRNA downstream 197419 23549140 ~ 23557843 (+) True tsnax
XM_039783544.1 mRNA downstream 197419 23549140 ~ 23557843 (+) False tsnax
XM_039783583.1 mRNA downstream 210562 23562283 ~ 23602583 (+) False disc1
XM_039783581.1 mRNA downstream 210563 23562284 ~ 23610472 (+) False disc1
XR_005637123.1 other upstream 667914 22647914 ~ 22669467 (+) False tasp1
TU265655 other upstream 1822253 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 2006094 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 2583572 20752773 ~ 20753809 (+) True G195518
TU265393 other upstream 2807066 20529767 ~ 20530315 (+) True G195448
XR_005637111.1 other downstream 210562 23562283 ~ 23605574 (+) False disc1
XR_005637109.1 other downstream 1006205 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 1212829 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 1656791 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 2261686 25613407 ~ 25620675 (+) True prdx3

Expression Profile