RNA id: XM_039783071.1


Basic Information

Item Value
RNA id XM_039783071.1
length 5189
RNA type mRNA
GC content 0.51
exon number 22
gene id si:ch73-105b23.6
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26495508 ~ 26521577 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGGTCTGCGTTGATATAGACGAGTGTAAAGACAACCCGTGCCATGTCAATGCAACATGCCTCAACACCATCGGGTCCCACACGTGCACCTGTAAGCGAGGTTTTTCAGCAAATGGCGCCCAGTGTAAAGATATAGACGAGTGTTCTGTGAAGGATACATGCCACCCACGGGCACTATGCACCAACGTCATGGGGGAATTCTTTTGCTCATGTCAGCAGGGTTTTAAAGGGGATGGCTTCTCCTGTCAGGATATTGACGAGTGCACCCTCTCTGATACCGTTTGTCCAGCCTTCTCAAAGTGTATCAACTCCCCTGGTGCTCATGTCTGTTCATGTTTGAATGGCACAGTGGCCTTTAATGGTACCTGTGTGCAACCCAGTCCATTGTGTAACCCTGTCTGCCACTTCCATGGCCTGTGCCACCAATCGCCTGCTGgataccagtgtgtgtgtgacctgggTTACGTGGGTGACGGGCTGGCTTGCTCGGATATAGATGAGTGCCAGAGGGAAAACATTTGTCCTCAAAATGAAACGGAGTGTATGAATATCCCAGGATCGTTTTCCTGTGTCTGCAAAAAGGGCTACACACTCAATGGAACACAGTGTGTTGATGTGAACGAGTGTAAAATGGGTCAGCATGACTGCAGTGACTTTGCCCAGTGTGTCAACACAATGGGCAACTATTCCTGCTTCTGTCTCGGTGGCTTCACAGGCAACGGGAAGAACTGCTCTGAGAGCAACCTGTACCCCTTTGGAGCAGAGGTTGGTGATAAAGGAGTCAAGATGGACACAGAAGATGGGAATTCCCCATACATCACGCCACCGATGGGTTTCCTTTTTATGGGAAAATTGTACGACAGGGTTTATTTTTCAGACAATGGCCTTGTCCACTTTCAATCTGTCGTTGAGAATGAGCAGTACCTGCTCCCCGCTCCTTCAGCCAGTGGTTTCCCCGACAACATAAATGTGACCCTGTTAGCTGCGTTTTGGGATGATGCTGACCTCACGCAGGGGGATGGACGGCTCCTCTATCAGGAATACCACAAGCTTGATATGTCAGATGTCTACTCCCAGGTAGTCTTTAACCGTACGGCAGACGATGTGACAAAGTTTGAGGAGCGGAGAGGCAAGCCTGCCTTCACCCCTGCCTGGATCCTCAAGATCACCTGGGACCATGTGATGCCCGTCTCCTACCAGAAGATCAACTTCTCAGAGACTAACACTTTCCAGTGTGTCCTGACCACCGATGGAGCACGCTCGTTTGCCCTCCTGCGATACGGGGAGATGCGTTGGGGTCCTGGCCAGAGAAAATACCACGACGCTCTCATCGGCTACACAAATGGAAAATCCTCCCACAAGGAGCCCACTGTACCCCCAGAAAACCTTTTCGGGCCTGGGGGCAGATACAGGCCCCAGCAGGTGAAAGGGGTCATGGGAAAGTTGGGTCAGCTGGTGTACGATTTGACAGCATCAGCAGGGTCGGACGTGGATTTGCGTATGAAGTGCCAGGTGTGGGCGATGAAGGAGCCTGACCCTGCTGCGTGGACAAGGGAGCTGTCTTCATGTCCCTGCACCCGCGCCCAGGCTCTGGAGGACCTGTCCTTCTTGCAGGATACTACTGATGCGGGATCAAGGGTGAAGACGCTGAGGGGTCAGCGGTGGGGGGGCGCAGGGGGGCATGTCTTCCAGTCCATCCTGTCCAGCAGACAAGGTTCAGGGAAGAGATGTGTGTATGACCCAGATGGTCCGCTGCTGGCTGGGTACAACGAGCGCTACTTCTCCGGAAACAGCATCCAAAAACATATTGATGAAGATCTCCTGCCATTCCAGTGGTGTTGTATCGAGTCTCCTCTATGCCACCTTTACCTCAACAAGAGACCACTGGACCGTTGCCAAGGTTGCAGCTGGGCTGGCCCTGACGGCTGCACTCTATCCAAGCAGGCGACGCGGGGTGTAGGGATGGTGTACGGCAGCCTCCATTTCATCACCTTCGATGGGACAGAGTACTCCTTCAAGGCCCTTGGCGAGTTTGTGATATTGCGTCTGTCCTCCGCCACCGGCTCTAATATCTTCACCCTACAAGGACAGACTGACAAGCTATGCACAGACGCAAAGGGGATCATTGAGGTCCCAGTGGTGGTGCGCATGGCTGCCTTCCACCAAGGCATTGGCAAGATTGAATGGAGATGTGTGGAGAAAGGAGACGGACTGCAGATTTTTGTGGATGATGTTGAAGTCCCTGTAACAGTTGGTGTCGTGCACGTGGGTGAGAAGGACTTTGCTGTGCGCTGTATGTCAGTGAATCGCTGTGCGGCGGTGTACGCCAGTGGTCTCCACGTGGTGGCGTGGCGGGTTGTTGGTCAAAATCAGCTGGCGGCCATGGTGGAGGTTCCTCAGGCCTTCTACAACCGCACTGTGGGTCTCATGGGTCTCTGGAGCTCCAACCGTTCCGACGATTTCCTCATGTCTGACGGCAGGCTCCTCCCCTCGACAAACCTCAACCCCCCCTCAGAGGAGAGACTGCACGGCTTCGGCTTGTCCTTTCCTGTCCCAGAGAGTCTGTTGTTCTCTTCACCTCCTCTGGTTCCACTGGAGCCTGTCTCCTCTGAGCAACTGCTGGAAAGCGCCAGTCCTGCTGAGGTGGAGGGCCTGAGGAGAACCTGTGAAGGCAGCATGCAGTGTGTCTACGACACGCTAGCAACCGGCAGCTCTGACCTGGGCCTGCGGACTCTGGACGCCAAGAAACAATATGACAACCTGGCTCTGATCTATGGTAACATGCCTCCCATAGTGAAAGGGCCCGCAGTGATCCGCGGTATCGTCAACTCCACAGTCAACATTCAGATTGTCGCCCAGGACCCAAACGGAGACCCCATCACCTACTCACTGCTCAACCCCAGGCCTCCACGGACTTCCATAGGCAGCGGTGACGGCATCCTGACATGGACGCCCCTGACCACACAGCCAGTCCAGCTGACCATTAAAGTCAGAGACAAGCTCACCAGCTCCCTGTTCACCCCCATCCTGCACGTCTGCAACTGCCTCAACGGAGGGTCCTGTCAGTACGACAGCATCACTAACAACTACCAGCAGGGAACCTTCCAGGTGGTAGGGTGCCTGTGCCCGAAGGGATTCAGTGGAAAGTTCTGTGGGAAAACTGCAGACATATGTCAAGGCAAACCCTGTTTTCGAGGAGTGCAGTGCAAGTCCGAGTCAAAGCCTGGCCAGTTCACCTGCGGCGAGTGTCCCAATAATACTGTCTCTGGGGGGAAACAGGGATACAAGTGCTTTGAGCATGACATGTGCAGCCCTCCTTTCCCCTTCCCCTGCCACAAAGATGCCGACTGCCTCAGCACGAAACAAAGCTTCACCTGCACATGCAAGCCTGGCTTTACAGGAGACGGAGGCAACTGCACAGATATAGATGAGTGTGCAATGCTCACAACCTGTCCCAACGCTAAGTTTGAATGTAAGAACAAGCCCGGCTCTGTGGAATGCATCTGTAGATACCAGAAGACCAAGGACACTGATGGATGTGGTGACTCTGCCAATCCTCCAGGGTTTAATGTGTTCAACGTCTCTATGGACCGGATGAAGAACAGACCTGATGGACtccaacagCTGGTGGACATTCTGTCGATGGGTTTCCAGAACAAATTCTACAACGCCAGCAAGAAGGATCCAGTGCAGGGCTCCAATTCCGATGTGACAGAGTATCGTATCAACATGTCCAGTGACACCCCCCACTGGTACATCAGAGACTACCTGGCCAGAGTCAGCAGCCACCATGACATCAGGAGCGTAGAAGTTGATGATCTGGATGAGTGTAAGTCCAAGGAAGCGATGTGCGCCCACCCTGCCCTCTGCACCAATACTTACGGAGGCTACAGGTGTGTTTGCAATGGCACAACTGATGTGGATAACAGCCAGTCCTGTGTGTTAGGCCGAGACAAGGTGAATGCTATGGAACAAGACCTTGTTCTGGGCCTGGTTCTGGGCATCGGCATCCCTCTGCTTTTGCTGCTGCTCTTGGCTGCGCTGGCCTGCTTCTGCTGCCGCAAGAAGACTATTACCGGAGACCTCCAGCACATGATGCCAGACTACATCCAGGAGCAGTACAACCCTCCGCCCTTCAACTACTCTGACCCTGCCCTCCACTACATTACCCACAGCAGCCCCCGGATCCTAGACCACTACATACCCAGGCAACGCCACAGATAGTACATACTAaaaccacatacacataaatgcaattaaacacacaaagaaaatgcACGGGCTTCTAAACACAAGCGCAAGCACCTTTTGGAGCCACcgtatatgttttataaagacaAGATGAATGACTCTTATTTATATCGTAACAAACAAGTAATTCAACCTGAGTGACTTTTAAAGCCAATTATTTCCAATTCTCTCCGCTGAGCAATGGACCTGCCAAGTTTAAACTGGAAGTTTTTTTTGCCAGGACAACAGTTTACAGTCAGAGTCTGACCCAGCAGAACTCAAGAATCTCTTGGCTGGAGACAGTGATGAAAAGTAAACCACTGCAGTGGTCTTTAGTTTCCAGCTGATACTAGGCCAACAGCCTCCTTGATAGCAACATTAGCATCAGGCAGAATACCTGGCATCAGGCTCCTGCCCTTGATCCAGTGCGTTATGGTTCTCCAAAATGTACAGTAATACATCCATATTTGTATCACTCAAAATCACCAAAAGACATAGTTGATTCAATTTATGTGTTATTAATTTTTGCAAACACACAATCCATTAAAAAATTAGGTGACGTGGTTTTCTAAAAGCATTCATCCCACTTTGGGATTACACTCTAGATGATTGTCCATTGCTGGATTGTGTCCCAGTTAATTTAACACAGCAGAGTATTTCAGTGTTTCAGTTGGCAGCTGTCTTTTGTGAGGCTGGACTGTCACTGCAAGTTAAAATACAATGtgtaaatataatgtaaatCAAAGTGCCACTTTAGTAACATTGTGCTGGGGGGATGTTATTTCAAGAACATAGCAACTTGGATGTTGGTGTACCCTACCTCTACCTACTCTGACCTCCCATTGGAGAGGAAAATGAATACCACATTTGTCATTTACCTGCAAGCTGATACATGTCAAGTTGAAGCTGCTGATAgttataaaagaaaatattatttatatatatatatatatatagt

Function

GO: NA

KEGG:

id description
K22017 MUC4; mucin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267441 lncRNA upstream 184222 26291118 ~ 26311286 (+) True G196967
XR_005637135.1 lncRNA upstream 365977 26122891 ~ 26129531 (+) True LOC120548056
TU267403 lncRNA upstream 377868 26117101 ~ 26117640 (+) True G196935
XR_005637134.1 lncRNA upstream 384333 26106533 ~ 26111175 (+) True LOC120548055
TU267388 lncRNA upstream 394486 26100492 ~ 26101022 (+) True G196921
TU267508 lncRNA downstream 11455 26533032 ~ 26533234 (+) True G197027
TU267510 lncRNA downstream 16904 26538481 ~ 26539273 (+) False stpg4
TU267513 lncRNA downstream 18267 26539844 ~ 26540135 (+) True G197029
TU267520 lncRNA downstream 103058 26624635 ~ 26627702 (+) True G197035
TU267521 lncRNA downstream 103058 26624635 ~ 26626781 (+) False G197035
XM_039784292.1 mRNA upstream 18781 26414524 ~ 26476727 (+) True plekhh2
XM_039783140.1 mRNA upstream 515071 25977457 ~ 25980437 (+) True hcar1-3
XM_039784661.1 mRNA upstream 525992 25962355 ~ 25969516 (+) True haao
XM_039783525.1 mRNA upstream 607434 25863295 ~ 25888074 (+) False xpo1b
XM_039783526.1 mRNA upstream 607434 25865049 ~ 25888074 (+) False xpo1b
XM_039784131.1 mRNA downstream 6206 26527783 ~ 26531726 (+) True calm2a
XM_039783202.1 mRNA downstream 13707 26535284 ~ 26548760 (+) True stpg4
XM_039784276.1 mRNA downstream 97840 26619417 ~ 26622570 (+) True mcfd2
XM_039784275.1 mRNA downstream 97845 26619422 ~ 26622570 (+) False mcfd2
XM_039784776.1 mRNA downstream 204139 26725716 ~ 26735774 (+) True tmem254
unassigned_transcript_1122 other upstream 512670 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 670831 25817251 ~ 25824677 (+) False LOC120548053
TU267128 other upstream 874833 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 1484747 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1926341 24564550 ~ 24569167 (+) True G196439
TU267544 other downstream 141582 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 204182 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 404841 26926418 ~ 27109140 (+) False LOC120547882
XR_005637159.1 other downstream 2591111 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 2591305 29112882 ~ 29114881 (+) False LOC120548242

Expression Profile