RNA id: XM_039783092.1


Basic Information

Item Value
RNA id XM_039783092.1
length 3743
RNA type mRNA
GC content 0.50
exon number 24
gene id ablim1a
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 24284646 ~ 24329241 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCTCACTCTGCTCTACCTGCAGCGGAGTGTTTTGTCATATATGCCACCTGCTGTTTGGCGTCTCCACCTGAAGGTGGACATCAACGCTCCAATTCTTACAGCACATCCATTGCAGGTCTGAAGTAACAGGTGGATGGATTTTAGAAGCAGGAGTTTCCACTGGAGGCCTAACTGGATATTGCTATGATTTTATGATGAGCTGCTGTGAAGTCGCCCACCAAGCTCTGGctcctttctttctgttttgtgCCTCTACGAACTCCCCATGTTCTTGATGTCCAAAGGCGCTGGATTTTAGAACGGGTCTGAGCCCGACTCTGGCCGACTTCCACCTGCAGTGCTTCCCACCCTACTCTGTGGGACAGTCGAAGGGGAACAGGGCGCCATGCCCACTATGCCCAATCTCAACAGCCTGGGCAAGCTGTGCAGCTCCAGCCGCAGCCACAGTGTCCACCGTGTCCACCGCGTCCGGGTGAAGCGCAAGAGCTCGGTCAAGCGCATGTCCATTATCGAAGATGGGCACGTGGCTGAGGTCCTGTACCTCATTCCTAAACAATACATGGAGCAGCTGCCCTACCTCGACCCAAATGATTATTATCTGAGTGAGAGGCTGAACGAGGTCACTACAGTGGCTCATGCACAGGACACACACCACCACTCCACAGAGAAGCCCCTGATTCAGTGCTACAAGTGCGGGGAGCCATGTAAGGGCGAGGTGCTGCGGGTGCAGAACAAGCACTTCCATCTCAAGTGCTTCACCTGTAAAGTATGTGGCTGTGACCTCGCCCAGGGGGGCTTCTTCATGAAGAATGGAGATTATCTGTGCACGCTGGACTACCAACGCATGCACGGCACACGCTGCAATGGCTGTGGGGACTTTGTGGAGGGGGAAGTGGTCACAGCCCTGGGCAAGACCTACCACCCTGCCTGCTTCGTCTGCACCATCTGCAAACGACCGTTCCCCGCCGGGGACAGGGTGACCTTTAATGGGAAGGACTGCCTGTGTCAGTACTGTGTCGAGCCCATGTCTCCGGGACCAAAGGACGTCCTGGGCTCCAGCAATTGTGCAGGATGTGGTCGAGACATTAAGAACGGACAGGCTCTTCTAGCATTGGACAAACAGTGGCATCTGGGCTGCTTTAAGTGTAAGGCCTGCACCAAAGTGCTGACCGGGGAGTACATCAGCAAGGACGGCGCCCCCTACTGTGAGAAGGACTACCAGATCCATTTTGGAGTTCAGTGTGAGGCGTGTCATCAATTCATCACAGGGAAGGTGCTAGAGGCAGGAGATAAGCACTACCACCCCAGCTGTGCGAGATGCAGCAGGTGcaatcagatgttcacagaaGGAGAAGAGATGTATCTGCAAGGATCAACAGTGTGGCATCCTGGCTGCAAGAACACCACCAGAACAGAGGAGAGACACAGGGAGCGGCCTACGAGGTCGTCATCCGAGAGTATTTGTTCCAGACCTGGTTCAAGCATACCTGGCTCACCGGGTCACACGATATATGCAAAAGTAGACAATGAGATCCTTGATTACCGAGACCTAGCTGCCATTCCAAAAGTCAAAGCCATTTATGACATTGAGCGCCCTGATCTTATTACCTATGAACCTTTGTACACCACCTCCCtggatgagagggaggagagaggagagaatgtGGGAGAGCTCCACACTGCCAGGAGGGAGCGTTCCCCCTTGCCCGATGACAAGTTTTCAAGAAACATGTCGCCAACCCCACCTGGTGAGggctaCGACAGGAGGGAACGCATCCTCCAAAGGTCCACCAGTCAGGGCTCCATAGGATCGCCAGTTTATAATCGCCATGGTTACACCCCCACCTTGTCACGGTCACCACAGCATTTTCACAGGCCAGAGGCTCTGACAGGCATGCAGAAGCTATGCTCCTCCTTGTGCAGTAACAGTGTGGGCTCCAGAAATAGTGACTCCCGCCCCACCTCCCCTTTCAGACACCACTTCCTCCCCCATAGCCAAGGCACTGACCCGCTGAGTGGCCGGAGTTCCCCCCTCCCGCTCAGGCCCGACAGCCGGCCGGTCACCCCGCCTCTCTCTCTGACCCCTAAACATTTCCACCTCCCAGaTCAGGGGAGCAACATCTACAGAAAACCACCCATCTACAAACAACATGAAGGGAGGAGACGATCCAGAGAAGAGGACGAGGAAGAGGCCTTGAAAAGAAAGCAGCTCCACGAGGAACATCTCAGCAAGattCAGTCTGGTTTGGGGAAGCTCATACTGAAGGAGGAGATGGAAAAAGAGGAGATCAGGGAGCGTCACGCACGTAGCCTCTCTGCTCAGCGCTACGACCCCAAACAGACCAACTGTGACGCAGATCCAACTTCTCCAACCAAAACTAACTCTCTGCCTGGCTACGGAAGGAATGGGCTGCACCGGCCCCAGTCAACAGATTTCACCCAGTACAACAGCTATGGTGACATGTGTGGAGGAGGCAGAGAGTTCCAGCACATTAAGGATGGCCGAGCAGCACTTGCAAGGATGGACAGGGGAGTATCTATGCCTAATATGTTGGAACCAAAAGTGTATCCCTATGAAATGCTCATGATAACCAGTAGAGGGAGAGCTAAACTGCCCAGGGATGTGGACAGAACCAGACTGGAGCGCCACTTAGCACCTGAAAAGTTCTTTGACATCTTTGGAATGGAGATCCAGGAGTTTGACAGGCTTCCCCTGTGGAAACGCAACGACATGAAAAAGAAGGCCAAGCTCTTCTAGCACTCAGAGCagcatgcacatactgtacattcattcAGATAGCACACAACAACTGTAATCTAGATGTAGGTTTTGGTTTATTTCCTATTTCTTCtgggttttttgttgttgttttttttgttttatcctGGCATAACCAAGGAAGCCATGGAATGGACTCTTTTTTTTGCTCTGATGCTTCCTGAGACTGCGGCCTGAATGATTTTGTCCAGTTGGACTTGCACAGGAAACAAGGAATGGGAATCTCTTCCATGTTCAAAAATGACaaagaatgaaaatgaatggtaaATAGGGTCATGTTATTTGGTTTGACTGCGCTCGTTTTACTTCTTGCTTTGCTTTTGAGTGGAACTGCTTTCCTTTCTTATTTGCTTGTTTCTTCCTACTATTTGTTGCTGTTTGATTCCTGTGGAACTTTGTAAGTACAGTAGAACCTCATGGCGCCATTACGAAATGTCCATGCTCGTAGCTTGAACATGTGTCAGCTTTCCTTCGCTTGGGCTGAAAGAGTTTTAGTCCAAAGTTCGCAAGAATCGGCTCAGTGAGTCTTtgaataataaacatttaaaaagaaaagacactGGAAAAAGCAGTCATCTCACTCATCAACTGTTTTAACGGATCTACATGGAAATGAATCATCTGAGCACCTACATATCGCCAGTCTCCTTTCCCTGGCTCCTGTGTATGCCAAACATTCATCTTGACcctgacaaaaaagaaaatgtctctCTTCTCAGGCTCTCATTAACATGGCCAGACACTTTCCCTTTACATGTATTGGAAGTACAAATCTTAATATATTTTAGTGCCGTATCCAACATACAGTAACCAACAAATAGATAAAACACCTAATGGGAGAAGCAACTGTATTTGAAAGTACTGTTTTATAAAAACCCACACTGCCATTTGTTGTATTGAAATCGAAGCCAATAAAGCTTTAAATCACCATGAACCATATGATCCTCAGCTATACCAAAGGTA

Function

GO: NA

KEGG:

id description
K07520 ABLIM; actin-binding LIM protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266595 lncRNA upstream 19953 24268273 ~ 24270052 (+) True G196332
TU266592 lncRNA upstream 19953 24268363 ~ 24270052 (+) False G196332
TU266594 lncRNA upstream 20019 24268363 ~ 24269986 (+) False G196332
TU266607 lncRNA upstream 125374 24164200 ~ 24164631 (+) True G196337
TU266606 lncRNA upstream 127790 24160613 ~ 24162215 (+) True G196336
TU266698 lncRNA downstream 76554 24405795 ~ 24426358 (+) False LOC120548495
TU266756 lncRNA downstream 310173 24639414 ~ 24639857 (+) True G196454
TU266759 lncRNA downstream 311458 24640699 ~ 24641876 (+) True G196457
TU266761 lncRNA downstream 311917 24641158 ~ 24641876 (+) False G196457
TU266762 lncRNA downstream 311917 24641158 ~ 24642057 (+) False G196457
XM_039784319.1 mRNA upstream 21981 24248198 ~ 24268024 (+) False srfb
XM_039784321.1 mRNA upstream 21982 24248198 ~ 24268023 (+) False srfb
XM_039784317.1 mRNA upstream 21982 24248199 ~ 24268023 (+) False srfb
XM_039784320.1 mRNA upstream 21984 24248200 ~ 24268021 (+) False srfb
XM_039784318.1 mRNA upstream 21992 24248198 ~ 24268013 (+) True srfb
XM_039784765.1 mRNA downstream 2631 24331872 ~ 24336022 (+) True LOC120548489
XM_039784764.1 mRNA downstream 6881 24336122 ~ 24340184 (+) True habp2
XM_039783571.1 mRNA downstream 28685 24357926 ~ 24367255 (+) False LOC120547848
XM_039784772.1 mRNA downstream 38713 24367954 ~ 24426502 (+) True LOC120548495
XM_039783731.1 mRNA downstream 125627 24454868 ~ 24494403 (+) False fgfr2
XR_005637111.1 other upstream 684431 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 1620538 22647914 ~ 22669467 (+) False tasp1
TU265655 other upstream 2774877 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 2958718 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 3536196 20752773 ~ 20753809 (+) True G195518
XR_005637109.1 other downstream 28685 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 235309 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 679271 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 1284166 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 1488010 25817251 ~ 25824677 (+) False LOC120548053