RNA id: XM_039783189.1


Basic Information

Item Value
RNA id XM_039783189.1
length 2119
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC120547658
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 30153511 ~ 30201820 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGGTTATTGAGGTTATTTGGTTATTGTGATATACATCTAATGTTTTCATGTATTTGCATTTCTGTGTCGGGCTGTGTGTGgctctgttggtgtgtgtgtggggggggggctctgTGTGGGGCTGCATTTGTGTGTCTTTGCATGTTTGCTTGGTCTCTTTATGTTTGAATACGGTTGTGTGTTCTCTTGGTTATTGaggttattttgttattgtgatAAATCTAATATTTTCATGTATTTGCTTTTCTGTAGATGCCGAAAGGAAAGGGGTATCGTCGCTCTTTGGCTACCAAGCTGAAGTACGCACAGCGCAACACTCCTCAGCTTCCCACTCCTGAAGTGATTCTGGTGCCACGTGGTGGTGCATGCTGTGGAACAGGGGTTCGTCACAAAATCAACATATGTAAGTCAGAGGTTATTGGAAAACAACACAAGCTCATCATTCCTCCAGAGGTCCCAGACAAGAAGTTCATTCTGGTTGTCGTCGATTCTCATCTGCGGGCCATAGTTGACGGGATCGTTCCGATGCCAAAGTCAAAGGACATTCCGCTGTCGTTTGGCTTCCTGTCTGTGCCTGGGGGCTGTGCTGCAGACCTGAGGGCAGAGTTGGTCAACGCAGTTCTTCCCCGGACCCCAGATGCTATCTGTCTCTTGGCACCCAGTAACAACCTCACTGCAAACCAAACCTTCAGTGAAGCGGCGGCGGATTTCCGCAAACTACTGGTCAGCGCCCACATCATTTGTGCTAAGGTCTTGGTTGTCGACTTCCCGCCACGTTTGAACGTTGCCCTGGATGTACAACAGCGTTATCTTGAGGAGTACCATCGTGTTGCAGCTCCGTTGGGTGTTACCTGCTACTCTGTTGAGGATAAGTTCCCTTTAAAGAACAGTCAGCTGTGGAGCAAAGATGgcATTCATCTCAGCGACAATCATGGAATGTCTATCCTGATGGAGCTTCTGTACATGGCCTCCTATGTCCAGGTTTTGGAGCCAAAGCGAGCAACTGTTGCGTGGAAAGGACCAGCTAGGAAGGCTTTTGTGTCGGTGCCAATGGTTCGTCGCAGGgttcctccttcctcccccaGGATTGGTGTGTGTGAAGATGGCTGGACAGTTGTTGGACAAGGCAGGAAGAGGTTCCAACCAGCTGACAACTCTGGTGTTTCACCCACAAAGAAACTGGTTCAGACGGAgGAGGACATGGTGGAATGCTCCATCGTGCTAAATCCGGTGTGGTTTAGTAAGGAGCTTCTTCAAACTTTGGGTGATGGCACCATTCACATCCCAGCCCCTGTGTCCGCAACTGGTCCAAAGGGCCTAAAGGAAGCACCAAAAGAACGTCACCACCATCAGTTTGCTACCAAGAAGACAGCGGTTTTGCAGCAGGACAAGGCTACTACATCAACGGCACTTCCTGGTCCATTGTCTGCCAGTCTCGCCACAGTGACTCTGAAGGAGGGCAGGATGCCTTCATCAGATCAGCAACTGGAGCACCCTGGGAAGgaGAAGACATCAGTGACATTGTCCAGCCCTTCCCTTCCTGATGTTAGTGAATGGCCTACACTACTGGACACCGTGAAGgaTCCAGTTGCAAAGCTGCAGTGGACCCATTGCATATCCAAGAAGGAAGATGATGTACAACAGgAGGAGGCGGCATCGGTATCTCCCAAGTCGTGTTATGCTCatgttgcagcaaagtgtccACTTCACCTTAAGAAGGAGACTGCCACAGTGACATCGTCCAGCCCTTTCGTTGCTGGTGTTAACGAATGCCGGGGACCACAGCCCACCGAAAAGGCTCCTACTGTAAAACTGCAGAAAAGGCATCTGATGTCACAGAAGGAAGATGGAATGCAGcagTCCTGTGAAGTACCTGAGATGACAGTGGTATCACCCCTGCTGTGTCTGCTCTTCCTGTTGCTACTCCACCTGACCACCTGGACCATTTCTAATTCCTGTTTTCCCACCTTgtctgattgtcctgccccgccctgatgtgtttcacctgctgtATCACCTTGTGAAAAGAGATGATGAGCAGCCAGGCCCATCTACAACCCTGACAACAAGCCGACAGGCCTACACAGAGAGGGGCTGGAAGGAAGAGTCAAACCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637092.1 lncRNA upstream 2795 30146823 ~ 30150716 (+) True LOC120547657
XR_005637091.1 lncRNA upstream 2795 30146823 ~ 30150716 (+) False LOC120547657
TU268398 lncRNA upstream 23288 30129885 ~ 30130223 (+) True G197739
TU268337 lncRNA upstream 86982 30064770 ~ 30066529 (+) True G197695
TU268327 lncRNA upstream 152580 29994581 ~ 30000931 (+) True G197686
TU268471 lncRNA downstream 138577 30338776 ~ 30339212 (+) True G197803
TU268472 lncRNA downstream 141138 30341337 ~ 30344038 (+) True G197804
TU268519 lncRNA downstream 196868 30397067 ~ 30397289 (+) True G197843
TU268521 lncRNA downstream 211709 30411908 ~ 30412212 (+) True G197845
TU268523 lncRNA downstream 212718 30412917 ~ 30413144 (+) True G197847
XM_039783843.1 mRNA upstream 190421 29956720 ~ 29963090 (+) True cdt1
XM_039783504.1 mRNA upstream 455368 29659412 ~ 29698143 (+) True pcca
XM_039784340.1 mRNA upstream 498460 29646723 ~ 29655051 (+) True LOC120548236
XM_039783338.1 mRNA upstream 520750 29628731 ~ 29632761 (+) True LOC120547721
XM_039783503.1 mRNA upstream 595176 29557263 ~ 29558335 (+) True LOC120547808
XM_039783506.1 mRNA downstream 67589 30267788 ~ 30336160 (+) True nvl
XM_039783833.1 mRNA downstream 305855 30506054 ~ 30600609 (+) False sertad2b
XM_039783832.1 mRNA downstream 305855 30506054 ~ 30600609 (+) False sertad2b
XM_039783829.1 mRNA downstream 305855 30506054 ~ 30600609 (+) False sertad2b
XM_039783831.1 mRNA downstream 367476 30567675 ~ 30600609 (+) True sertad2b
TU268204 other upstream 534495 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other upstream 556686 29595292 ~ 29596825 (+) False LOC120547718
TU268132 other upstream 803583 29348425 ~ 29349928 (+) True G197531
XR_005637159.1 other upstream 976017 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other upstream 1038630 29112882 ~ 29114881 (+) False LOC120548242
TU268683 other downstream 1034165 31234364 ~ 31234723 (+) True G197999
TU268894 other downstream 2593089 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 2762189 32962388 ~ 32965074 (+) True G198245
unassigned_transcript_1124 other downstream 3502087 33702286 ~ 33702357 (+) True trnaw-cca_27
XR_005637201.1 other downstream 4674251 34874450 ~ 34874577 (+) True LOC120548589

Expression Profile