RNA id: XM_039783258.1


Basic Information

Item Value
RNA id XM_039783258.1
length 1348
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120547700
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26758333 ~ 26767338 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACTGAGCTTTTTGTTCGGCATCTTATGTTTTCATTAGGAAAAGTAGCGCAACCAAGTCACCGAGGGAAGGATAAGGGAGCAACGGAGTGAGCGCAGGGCaaagagggagaggggaagAGTTGTGCAGGAgaagaaatcttttttttttcagtctggTTCTGAATTAGAGGAGATTTTGGGAgatttgtgccttttctctCACACAGTCCCCACTCTTCGTCACCAGCTGCTCGCCAGATTTCAGCCATGACCTGTCCCTTCACCTCCTCAGTTGGACTCCTGTTCCTTCTGATTGGCTACGCTGCTGCAGGACCTGGACCTGAAACTGAACTGCGGCCTCGAGCGGTGCGTTCAAGTGCCTGTCAAGAGCACACAAACCTTCACAACCGCCTGGATGTAGTGGAGAAGAAAGTGGAGGACACGGTTGAGAAGTTGGAGGTTGAGCTGGCTGCTCTTCTGGATGCCATTGAAGCCCCAGAGTGGCGCCCCCTGTTGGACAACACAGGGAAGACAGCCGTGGACATCCTGGAAGACCCTGGGCAGTTAAACCAACCAGGAAACGGGGGTGGAACAGCGATTCAAGAACCCTTTTGAACATAGACTTCGAAGGATCCAATCCTTGTCCATGATTTAAACACAAGAAAGTAAACTGTCTGTATGCATAAACTGTATCTGTAGCAAAATTAAGTTTGTATCCTAAAAGAGGAGGCACAAGAAGGCCAAGCTTGTCTGCATTATTTACTCTTCCTAATCCTGTGACAGACTTATCTCTTTCCCAGTCACAGCTTCAGTCCTAGATTCTTTCCCCTGCAGTCAACAGTGGTACGGCTCATGTTGACAATGCTATTCAAAGAGATGAATTCACTTTGGACGCCTCTGCTCAGTCACTTCGTACCCCTGCTCTTCATCGCCCTCCTCTGTCTGCAGACAAACTGTTGGAAATGACAAAGACACTGAGACACAAAATTACTGGAAGGAGATTTATTTCTTTATCAAAGCAGTTaaagcagcattttttttttcaaacacacGGAGCAGTTTCAGTTGGTACAGAAACAAGGCTTTTCACTGATTCTCCGTCAAAATTCCTGCAGCACAAGAACATTATGCAAAATAGGAtcaagaggaggaaaagagtggcaaaaataacattttattcttATCGATTTCTTTTTCTCAACAGGGCACTGAGATTCAAACTGTATCCACAGAGTTAAGACATCTACAGTATGGTACGCCTCGAGAGCATCCATCACAAAACGGCTGAATAGGAGACATGCTGTTGCTGGTCATACACTAGcacaatgccttttttttttggaaacacCTAACAGCATCCAGAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267570 lncRNA upstream 12248 26740257 ~ 26746085 (+) True G197069
TU267571 lncRNA upstream 15186 26740257 ~ 26743147 (+) False G197069
TU267520 lncRNA upstream 130631 26624635 ~ 26627702 (+) True G197035
TU267521 lncRNA upstream 131552 26624635 ~ 26626781 (+) False G197035
TU267513 lncRNA upstream 218198 26539844 ~ 26540135 (+) True G197029
TU267581 lncRNA downstream 116981 26884319 ~ 26953805 (+) False pwwp2b
TU267596 lncRNA downstream 297388 27064726 ~ 27104508 (+) True G197084
TU267599 lncRNA downstream 348628 27115966 ~ 27116514 (+) True G197087
TU267601 lncRNA downstream 375233 27142571 ~ 27142786 (+) True G197089
TU267660 lncRNA downstream 497941 27265279 ~ 27265508 (+) True G197137
XM_039784776.1 mRNA upstream 22559 26725716 ~ 26735774 (+) True tmem254
XM_039784276.1 mRNA upstream 135763 26619417 ~ 26622570 (+) True mcfd2
XM_039784275.1 mRNA upstream 135763 26619422 ~ 26622570 (+) False mcfd2
XM_039783202.1 mRNA upstream 209573 26535284 ~ 26548760 (+) True stpg4
XM_039784131.1 mRNA upstream 226607 26527783 ~ 26531726 (+) True calm2a
XM_039782998.1 mRNA downstream 98287 26865625 ~ 26873668 (+) False LOC120547537
XM_039783000.1 mRNA downstream 98470 26865808 ~ 26873668 (+) False LOC120547537
XM_039782999.1 mRNA downstream 98701 26866039 ~ 26873668 (+) False LOC120547537
XM_039782997.1 mRNA downstream 98795 26866133 ~ 26873668 (+) True LOC120547537
XM_039784217.1 mRNA downstream 106877 26874215 ~ 26884434 (+) False pwwp2b
TU267563 other upstream 22546 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 94548 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 775495 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 933656 25817251 ~ 25824677 (+) False LOC120548053
TU267128 other upstream 1137658 25613407 ~ 25620675 (+) True prdx3
XR_005637113.1 other downstream 159080 26926418 ~ 27109140 (+) False LOC120547882
XR_005637159.1 other downstream 2345350 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 2345544 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 2581087 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 2769181 29536519 ~ 29619016 (+) True LOC120547718

Expression Profile