RNA id: XM_039783368.1


Basic Information

Item Value
RNA id XM_039783368.1
length 2733
RNA type mRNA
GC content 0.54
exon number 21
gene id vit
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 23011389 ~ 23032132 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGATCTACTCCTGCCTGGGTGAAGAGAGCTGGGTGGTTGAAGTGGGACGGGCAAAGAGGGGAAACTCTGGCCCCGTCCCGTCCTCCACTTTTAATGAGCGCTCCGATCATACAGGAGTAAAAGTCCAGGTGGAACAGTTCAGCGCCTGCACACACGCCCGCTGGTCCAaaattatttttcaatgaaagaGTAAGGATTCGGGGGGGGGGAAGACTGCGCAAGGAATTACTTTTGTTTTAACTCCTGTAGAACTATTTTACCTTCTCAGGTTGGGAGGTTAGACAAGGACATCTGGCTGACCCACTGAAGCAGCACACCACCCATCATGAGCAGAGCATCACTCACTGCCATCTGCCTCGtgCTCCTCCTCTCCTGTGCTTGCTGGGCCAGGCCTGACAGATCAAAGAACAAGAAACCAAAGCTAGTTGTTCCAGCCATAGAGTGTGATATCAGAGCAGGAAAGATCAATCTCCCAGAGTTCATAGTCAAATGTCCCGCACATTGTAAGGAGACAAAGCAGCAAGTCTATGGGACAGGCGTGTTCGCCTCCATATCCAGCATCTGCAACGCAGCCATACACAGTGGCGTCATCCCCAACACAGGAGGGAAGGTGATAGTGAGGAAGATGGCCGGGCAGAACTTCTACAAAGGCAGTAATGCCAATGGAGTgcgctctctgtctctacctaAGTGGAGGGAGTCGTTCGTTGTCTCAGtgGGGAAGCCCAAGAAAGGAGTGATCTACCCATCTACTCTGGACTACGTCCCCTCAAGACCAACCTACGTGAAAACTAGTCAAAAGGAGGCCACCACAGCGCTGCCTACGACAACAACACCTGAACCCACCACAACTACAACACCTgaacccaccaccaccacactgGCTACCACAACAACCACCACCACTACACCTCCACCACCACCGACTACTACCAAGCCTCGTGCTGCTGTGCATAAAGTCAGGGATGCAGGCAGCAGTCACCCATACCTTGCCTCTGTGGCAGGCGCAAGTTCAAGCATGCGCAGACCAGAGGCAGGGGCAACCATCAGGAGACAGCCATCCTCTCCAGTTGGTCCAGCTTTTAACAGGGTTCAGCCGGCTCCGCCCGAGCGGACTCCAACCATGAGCCAGTCAAACCCCGCTTTTCCCAGAAGGGATTGGGcacctccctcctttcctcgtCCTGATTGGTTCCCTGGAGCTCGACGACCAGCAGTTGCTGATGCCTCCACCTTCTCTGCTGTACATTCAGACGTTAGTTATGCAGCTCCAGACTCAGGATACACATGGAGTGAGACGGACACACCTGAGATTACGGCACGGGATCCTAGGCCTGATATCTCAGAGTATGAGCGCTGGTTTTATAACTTTGGACCGTACCTGCCTCGCTCCACTGACTCAGATGGCAACCGTAAAGTGCCATTGGATACAACCCATACTAGAGTGGAGCCAGTGGATGCCTGGAAGCCAGATGCAAACCTTTATGAATCAGgcttcaacgtGAGGGAGCAGGAACCTGTACCCAGAGCACCTGAGCCTGTGTCACAGGGAGACCCAAATTGTAAGGTGGACCTGGCCTTCCTGATGGATGGGAGCTGGAGCATTGGGAAGAGGCGCTTTAAGATCCAGAAAGACTTCCTGTCTGAGGTGGCTCAGACCATCAACGTGGGTGTGGCTGGACCCATGATGGGTCTCATCCAATACGGGGATGACCCTGTGACAGAGATCAGTCTGAAGTCTTACTCCAGCTCCAGAGAGGTGAAGTCAGCCATAGAAAAGATTGCCCAGAAGGGAGGCCTCTCCAATGTAGGAAAGGCCCTCTCCTACATCAACAAGCACTACTTCAGTGATGTCAATGGAAACCGAGGCGGTGCTCCTAACGTGGCCGTGGTTCTGGTGGACGGCTGGCCCACAGACAAGGTGGAGGAGGCGTCTCGGCTCGCTCGGGAGTCTGGCATCAACATATTCTTCGTCACCATCGAGGGCGCTGATGACAACGAGAAACAAAACCTGGTTGAGACCAACTTTGTTGACAAGGCTGTGTGTCGGACAAACGGCTTCTTCTCCCTGCCCGTGGCCAGCTGGTTTGCTCTGAGGAAGGCCGTGCAGCCCCTGGTGAAGAGAGTGTGTGACACAGACCGCCTGGTGTGCAGCAAAACCTGCCTCAATGCCAACGACATCGCCTTCGTCATCGACGGCTCCAGCAGCGTCGGAACTGGCAACTTCCGCACGGTGCTGCAGTTTGTGGCCAACATCACGCGGGAGTTTGAGATTTCTGACACCGACACACGGGTCGGAGCTGTGCAGTACACCTACGAGCAGAGGCTGGAGTTTGGCTTCGGCCAGTACAACAACAAGGCCGAGCTGTTGAACGCCATCAAACGCATCAACTACTGGAGCGGCGGGACCAGCACTGGTGCTGCCATCACCTACGCCGCAGAGCAGCTTTTCAGCAAATCCAAACCCAACAAACGCAAGATCATGATTGTCATTACAGACGGGCGCTCCTACGATGATGTCAGGGCGCCTGCACTGGCCGTCCATCGCCAAGGTGTGATCGCCTACTCCATCGGCATTGCCTGGGCCGCCCAGGATGAGCTGGAGTACATCGCCACGGACCCAGACAAGGAGCACTCCTTCTTCGTTGATGAGTTCGACAATCTCTACAAATTTGTACCCAAGATCATCCACAACATCTGCCAGGAGTTCAACTCCCAGCCCAGAAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266142 lncRNA upstream 20688 22990433 ~ 22990702 (+) True G196017
TU266141 lncRNA upstream 21500 22989684 ~ 22989890 (+) True G196016
TU266084 lncRNA upstream 47260 22963967 ~ 22964130 (+) True G195973
TU266079 lncRNA upstream 86728 22922776 ~ 22924662 (+) True G195968
TU266075 lncRNA upstream 89491 22921175 ~ 22921899 (+) True G195964
TU266168 lncRNA downstream 1701 23032452 ~ 23034791 (+) True G196028
TU266188 lncRNA downstream 105695 23136446 ~ 23144652 (+) True G196036
TU266210 lncRNA downstream 116061 23146812 ~ 23147635 (+) True G196057
TU266278 lncRNA downstream 158849 23189600 ~ 23190156 (+) True G196111
TU266291 lncRNA downstream 227385 23258136 ~ 23261055 (+) True G196124
XM_039783038.1 mRNA upstream 2171 23002004 ~ 23009219 (+) True LOC120547567
XM_039784616.1 mRNA upstream 28787 22978152 ~ 22982603 (+) True spast
XM_039784617.1 mRNA upstream 28787 22978152 ~ 22982603 (+) False spast
XM_039783482.1 mRNA upstream 47436 22959309 ~ 22963954 (+) True mkks
XM_039784018.1 mRNA upstream 91078 22894831 ~ 22920312 (+) True jag1b
XM_039783760.1 mRNA downstream 50228 23080979 ~ 23083906 (+) True gpatch11
XM_039783060.1 mRNA downstream 54181 23084932 ~ 23094240 (+) False LOC120547580
XM_039783061.1 mRNA downstream 54182 23084933 ~ 23092922 (+) False LOC120547580
XM_039783058.1 mRNA downstream 54183 23084934 ~ 23094240 (+) True LOC120547580
XM_039783059.1 mRNA downstream 54183 23084934 ~ 23094240 (+) False LOC120547580
XR_005637123.1 other upstream 341923 22647914 ~ 22669467 (+) False tasp1
TU265655 other upstream 1496262 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 1680103 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 2257581 20752773 ~ 20753809 (+) True G195518
TU265393 other upstream 2481075 20529767 ~ 20530315 (+) True G195448
XR_005637111.1 other downstream 531532 23562283 ~ 23605574 (+) False disc1
XR_005637109.1 other downstream 1327175 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 1533799 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 1977761 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 2582656 25613407 ~ 25620675 (+) True prdx3

Expression Profile