RNA id: XR_005637109.1


Basic Information

Item Value
RNA id XR_005637109.1
length 2887
RNA type transcript
GC content 0.50
exon number 18
gene id LOC120547848
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 24357926 ~ 24367599 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCCAAGACCAACTTGGGCTGTGGATGTGGCAGCAAAGTAGCGCCGGGTCTAGCTGACAACGTGTCTCCTGCAGTGCACTCACAAGTGTAGCTAGTTGTGTTTGGTTTTCTAGATTTTCACATTGTAAGCTGTCAAGTGCCAGTGCCATGTTTGCCAGGCTGGCCTTGTGCACTCGCCTGCCATCCAGAATCAGACAGTCCAATGTCTGTCCAGTCTCCATCAGATCACATTCCCAGGTTAAATTCCCACGTCCCCATGGAAAGTCTTTTGTCCACCGCAGTGAGTTAAAGCAGGCCAAGCGTATAGTAGTGAAGCTGGGAAGTGCTGTGGTGACACGCGACGAGTGCGGTCTGGCACTGGGACGACTGGCCTCGATAGTAGAGCAGGTGGCCATGCTGCAGAACCAAGGCAGGGAGATGATGATTGTAACCAGTGGGGCTGTGGCATTTGGGAAGCAGAGACTAAGACATGAGATCCTGCTGTCTCAAAGCGTCAGACAAGCCTTGCATTCTGGACAGAACCAACTCAAAGAAATGtccGTTCCAGTTTTGGAGGCGAGGGCATGTGCAGCTGCTGGACAGAGCGGTCTGATGGCGTTGTATGAAGCTATGTTTACCCAGTACAGCACCTGCACTGCACAAATTCTGGTCACCAACCTGGATTTTCATGATGAGCAGAAGCGTCGCAACCTGAACAGCACGCTCCATGAACTGCTGCGGATGAACATAGTTCCGATCATCAACACCAACGATGCTGTTGTTCCGCCCCCTGTTCCCAACAGTGATCTGCAGGGGGTAAATGTAATAAGCATCAAAGATAATGACAGCTTGGCTGCACGGCTGGCTGTTGAAATGAAAGCAGACCTCCTTATCGCCCTGTCTGATGTTGAAGGCTTATACGACAGTCCCCCAGGAACAGATGATGCCAAGCTTATTGATATATTCTACCCTGGAGACCAGCAGTCAATCACGTTTGGCACCAAGTCCAGAGTCGGCAGTGGTGGCATGGAAGCCAAGGTGAAAGCCGCCCTTTGGGCACTACAGGGTGGGACGTCCGTTGTCATTGCCAACGGCACACATCCTAAAGTCACAGGCCACGTCATCACAGACATTGTGGAAGGGAAGAAAGTTGGCACCTTCTTCTCTGAGGTGAAACCTGCAGGTCCAACTGTGGAGCAGCAGACCGAGATGGCCCGGCATGCAGGCAGGGCTCTGGCCTCCCTGGACCCTGAACAGAGAGGGGAGATCATCTGCTGTCTTGCTGAGCTACTTACAGAGAAGAAAGATGAGATTCTCAGTGCCAACAGGAGAGACATGGAGTTTGCAAATTCATCAGGTCGTCTCTCCCAGCCTCTGATCAACCGCCTGAGTCTGTCAACTGCTAAGCTGAACAGCCTTGCCATTGGCCTCCGTCAGCTTGCCGTGTCCTCCAGGGATAGCGTGGGTCGGGTGCTGAGGAGGACCAGGGTGGCCAACAACCTAGAGCTGGAACAAATTACTGTCCCCATCGGTGTGCTGCTGGTCATCTTTGAGTCCCGTCCTGATTGTCTCCCTCAGGTGGCAGCTCTGGCTATTGCCAGTGGAAATGCTTTGCTACTGAAGGGGGGTAAAGAAGCTTCCAACACCAATAAAATTCTACATCAACTCACTCAGGAAGCACTTTCCATTCATGGAGTGGCGGATGCCATTCAACTGGTGAGCACGCGTGAAGAAGTGGAGGATCTGTGCAGGCTCGACAAGTTGATCGACCTGATCATTCCAAGGGGCTCGTCCCAGCTGGTCCGGAACATCCAAAGGGCAGCTAAGGGTATTCCTGTGCTGGGCCACAGCGAGGGCATCTGTCACGTCTACATTGACAACGACGCCAGCATAGACAAAGCTATTGATGTCGTCAGAGACTCCAAATGTGACTACCCTGCAGCCTGCAATGCCATGGAGACCCTCCTCATTCACAGGGATCTGCTGCGAACTCCTATATTTGACCAGGTCATTGATATGCTGAGAACAGAAAATGTGAAGATCCATGCAGGCCCCCGGTTTGCATCCTATTTAACTTTCAGCCCATCTGAGGTGAAGTCTCTGAGGACAGAGTATGGGGATCTGGAGTGCTGCATTGAGGTGGTAGACAGCATGCAGGATGCTGTGGACCACATCCACAAATATGGCAGCTCCCACACTGATGTCATTATTACAGAAAATGAAGAGACAGCTGAACAGTTTCTGCAGCAGGTGGACAGCGCCTGTGTATTCTGGAACGCCAGCTCTCGCTTTGCCGATGGCTACCGCTTTGGCCTAGGAGCGGAGGTTGGTATCAGTACAGCACGGATACACGCCAGAGGTCCAGTGGGTTTGGAGGGGCTTCTGACCACCAAATGGGTCCTTCGAGGAGAAGGGCACACAGCGGCTGACTTCTCTGAGCAAGGCAGTATGAAATACCTTCATGAAAACATCCCTGTACCCCAGGGGAGCTTTAATTAAGTGCCCAACCAAAGAGCCATCAACAGGAATCCAGATTACTGATGTCTACCCAGAGTTCATTTGAAGatgaatAACAATCTCCTGAGACTATGATTGGTTGTTACGTGACTGGTGAGAGGGAAAGGTTTttggtaaaagaaaaacactaaaTTCTGTTATTTACATATGACCGGTGAAACAAAGTATACACAGACAAAGCTCTCTcctcctgtttaaaaaaaaaaaaaaaaagaagaagaaatgattGGCCTAGCTGTGGTTTTATAACTTATTTTTCTACATGCAAACTATCCCTTGGCCTTTTTGTAATGTACTTTAAGTGTTGTTTCTGCAGGATTGTGGTTTAGGTATTTTGCTGTCCTTCCTCTTTGCACAGATGATTTAATAAATATGCTGTACAGTTCTTTA

Function

GO: NA

KEGG:

id description
K12657 ALDH18A1, P5CS; delta-1-pyrroline-5-carboxylate synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266595 lncRNA upstream 87874 24268273 ~ 24270052 (+) True G196332
TU266592 lncRNA upstream 87874 24268363 ~ 24270052 (+) False G196332
TU266594 lncRNA upstream 87940 24268363 ~ 24269986 (+) False G196332
TU266607 lncRNA upstream 193295 24164200 ~ 24164631 (+) True G196337
TU266606 lncRNA upstream 195711 24160613 ~ 24162215 (+) True G196336
TU266698 lncRNA downstream 38196 24405795 ~ 24426358 (+) False LOC120548495
TU266756 lncRNA downstream 271815 24639414 ~ 24639857 (+) True G196454
TU266759 lncRNA downstream 273100 24640699 ~ 24641876 (+) True G196457
TU266761 lncRNA downstream 273559 24641158 ~ 24641876 (+) False G196457
TU266762 lncRNA downstream 273559 24641158 ~ 24642057 (+) False G196457
XM_039784764.1 mRNA upstream 17742 24336122 ~ 24340184 (+) True habp2
XM_039784765.1 mRNA upstream 21904 24331872 ~ 24336022 (+) True LOC120548489
XM_039783100.1 mRNA upstream 28685 24284646 ~ 24329241 (+) False ablim1a
XM_039783104.1 mRNA upstream 28685 24288042 ~ 24329241 (+) False ablim1a
XM_039783096.1 mRNA upstream 28685 24288044 ~ 24329241 (+) False ablim1a
XM_039784772.1 mRNA downstream 355 24367954 ~ 24426502 (+) True LOC120548495
XM_039783731.1 mRNA downstream 87269 24454868 ~ 24494403 (+) False fgfr2
XM_039783728.1 mRNA downstream 87271 24454870 ~ 24494403 (+) True fgfr2
XM_039783730.1 mRNA downstream 87271 24454870 ~ 24494403 (+) False fgfr2
XM_039783733.1 mRNA downstream 87271 24454870 ~ 24494403 (+) False fgfr2
XR_005637111.1 other upstream 752352 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 1688459 22647914 ~ 22669467 (+) False tasp1
TU265655 other upstream 2842798 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 3026639 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 3604117 20752773 ~ 20753809 (+) True G195518
TU266740 other downstream 196951 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 640913 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 1245808 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 1449652 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 1615146 25982745 ~ 25982838 (+) True trnai-uau_2

Expression Profile