RNA id: XM_039783631.1


Basic Information

Item Value
RNA id XM_039783631.1
length 3063
RNA type mRNA
GC content 0.49
exon number 25
gene id lrrfip2
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25033472 ~ 25054947 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTAACCAGTGTGTGTGGAAGGTGGAAATTGGGTAAGGAGGGCAGTGGAGAGCGGTGGAAAGGCGGACTGATGACAGCTGTCAGTGTGGACAAAAACACTACCAATCTCCGAAGAGAAGCCGAATGGCTCTCTCCTAAACCTCTAGGAAAGAAGGGACACACCTTGGCAGTATCGCGGGTTATTTAAAGGTGTCGCGAAGGTATTTTCATACAGTGTATTTCCTGGCCTTACACATCATCGGTGGAGCTACAGTTGCATTGGCAACATGGGGACACAAGGCACTGGCAGAAAGCGTACCCCTCTAAAAGACCGGTTCTCAGCAGAGGATGATGCCTTGAGTAGTATTGCCAGGGAGGCGGAGGCGAGGCTTGCAGCAAAGAGGGCAGCTCGGGCGGAGGCCAGGGATATTCGAATGAGAGAACTTGAACGGCAGCAGAAAGAGCGTTCTTACCAGTCATCCAGCAGCAGTAGCAACAGAAAATGGGGACAGATCCACCAGTGGATGGCTGACTCAGAAAAAGCCCGAGGCTCTAGTAGTAGTATGTCCAGCAGCCGTCATCGCCGGGGGCTGGATGATGATGTCATGTCAGTCCGCAGCTACAGGtCTTCCACATCATCAGCAATACGAGACTTGGGGTCTAAGAGTCGATCCAGTTCCCGTAGAAAAGATGcgttgtctgaCGGCCTCTCCACTAGCTCCACCCTCAAGACTTCCCGTTCCACTAGTTCTGTGTACAATGACCTGCATGGCCATAAAAGGGCTTCATCCAGCTCTGCGAAGAAGGATCTGCTGACTGGACTTTACCACGATCAAAGGAACTACACCAGCCTGACGAAGACCAAACCAGTGCCTCCTCCCTCCACATCCACCTATCAGCCTCGGGCCACCACTTCCTCGTCCTCCACCACTGGCACAGGGCTGCCTCGCAGCTACAGCATGGCCTCTATTTGCGACGACACCAGTCTTTACGGCTCGGGGAACAGTTCGAGAGCCCCCTCTGAATATAGCTGGTACTCCTCTGTAGCCAGCTCCACCCGCAGTAGCCCTGTGTCTTCTTCAGATGATGACACTGTCAGCAGCGTGTCCCAGGAACGCTTCGGCAGAGGCCGCAGGGACAGTGTGTCGTCTGACTTCTCGGACATTAGTGAGTCGGCTGCAGATTATTTCAGCCGCACCAGCCGAAGAGGCAGCATTGTGTCTGACCTCGATGATTTGAGCATTCCAGATCTGGACGCTCTGGATGAAAAATGTGACAAGCAGTATACAGACTTTAGTCGGCCATCTTCCCGATGTGCCACCCCAGGCCTGTCAGCAGCCACGTTGGCATCGCTGGGTGGCACCTCGTCACGAAGGGGCAGCACAGACACGGGTAGCATCTATGACCCTGACACCAGTCTGAGTGAACTTAGGGATATCTATGAACTTAAGGACCAGATTCAGGATGTAGAAGGGCGGTACATGCAAGGGCTTAAAGAGCTAAAGGAGTCACTTGCAGAGGTGGAGGAGAAGTACAAGAAAGCCATGGTATCGAACGCACAGCTGGACAACGATAAAGGCAACCTCATCTATCAAGTGGACACACTAAAGGACGTCATCGAGGAGATGGAGGAACAAAGGGCTGAGATGAGGAGGGAGCTGGAAGACAAGTCAAAGGAACTAGAAAGACAAAAGCACACGTGTACAGTCCTGCAGCATAAACAAGAAGAACTGAAAGAGGGAATCCGCCAGAGAGATGAGCTTATAGAGAAACACGGGCTGGTCATCATCCCAGACGGCACACCAAACGGGGAGGTCAACCATGAGCCTCTGTCCTCAGGGATCACTGTGGTCTCCCAGGAGGCCGCTCAGGTGCTGGAGTCTGCAGGAGAAGGCCCGCTGGATGTCAGGCTACGGAAGTTGGCAGAGGAGAAAGATGAACTGTTGGCTCAGATCAGGAAGCTGAAGAatcagctggaggaggagagacagaagcaCTCAAAGATGGATAGTGCATACACAGACGGGGAGAGGATGGAGAACGGTACAGACCTCCACGTTATTGAGATGCAGAGAGATGCCAACAGACAGATTAGTGAATACAAATTCAAGCTTTCTAAAGCCGAACAGGAAATAGGTACAATGGAACAAAATATTAACAGACTTGAAGGACAAGTGTCCAGGTACAAGGCATCAGCAGATAACTCGGAGAAAGTAGAAGACGAACTTAAAGCAGAGAAACGGAAACTTCAAAGAGAGCTTCGCACAGCTCTAGATAAGATCGAGGAAATGGAGATGACCAACAACCACCTAGTAAAGCGCCTTGAGAAGATGAAGGCCAACAGGAACGCCCTTCTGTCACAGCAGTGAGGCAAGGCAGCGTCACCACAGAAGCCCTTAAACTCGCACCTCAAGACCTCTGACTGCCATACTGCGTCTGGAGCACATTTCCATTTCTAGCTGTAACACTTTAAGATTTGTAGCTAACCAAAAACACTTACAAAAAACGTGTAGCACAGGCAGCAAACTgaattgtccttttttttcttttttttttttaaacggaaGCGTTGTCGGGCAAGCCGCCAGTGTTTTTGGAGGAATGACTCAGAAACTTAACtaataaaactataaagttGCTGGGAGATCCATCTGAGGACATTTCTCGAGTCACTACTTCCTTTTTCAGAGCTTTGTACTACATCATGTTATCCACGAGATTTGATCTCTCTGGCTGGGTGCTCGGCTGTTCttcgtttagtttttttttgttgtttttttttttgataagtTGCATGAATGAGTATAATGATGCTTTTAAACTATTCAACCCTCACGGCTGCTCCGGCCCCGCACCTTTCCAGCTTCCCCCTCACACAGTGAAGTGCCTTTTCACACTAGGAGACTGGGGGTCCGCACCGCTCAATGAGACAATAATCCTTTTTAACAGGTACagaatgatttatttaaaaaggtgcagtcaatatttgaaaatatgtAGAACCAACTGTGTCTGCTGCGGTTTCATTGaacattttcaaatatttaaaagatttcttgaaaataaatgtgtaatttaCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266792 lncRNA upstream 84441 24947838 ~ 24949032 (+) True G196485
TU266788 lncRNA upstream 120005 24873802 ~ 24913468 (+) True G196481
TU266782 lncRNA upstream 185783 24847114 ~ 24847690 (+) True G196476
TU266781 lncRNA upstream 189621 24843443 ~ 24843852 (+) True G196475
TU266762 lncRNA upstream 391416 24641158 ~ 24642057 (+) False G196457
TU266850 lncRNA downstream 56448 25111395 ~ 25113349 (+) True LOC120547601
TU266852 lncRNA downstream 56448 25111395 ~ 25117367 (+) False LOC120547601
TU266845 lncRNA downstream 58073 25113020 ~ 25117367 (+) False LOC120547601
TU266848 lncRNA downstream 58073 25113020 ~ 25117367 (+) False LOC120547601
TU266849 lncRNA downstream 62131 25117078 ~ 25119122 (+) False LOC120547601
XM_039782959.1 mRNA upstream 20224 25008474 ~ 25013249 (+) True dact2
XM_039783128.1 mRNA upstream 56653 24954712 ~ 24976820 (+) False smoc2
XM_039784171.1 mRNA downstream 20267 25075214 ~ 25084770 (+) True fam83ha
XM_039783532.1 mRNA downstream 30967 25085914 ~ 25089070 (+) True LOC120547833
XM_039783534.1 mRNA downstream 36939 25091886 ~ 25108080 (+) True herc4
XM_039784104.1 mRNA downstream 76506 25131453 ~ 25137332 (+) False sirt1
XM_039784103.1 mRNA downstream 76507 25131454 ~ 25138549 (+) True sirt1
TU266801 other upstream 22712 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 464306 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 665874 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1427899 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2364006 22647914 ~ 22669467 (+) False tasp1
TU267128 other downstream 558460 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 762304 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 927798 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1608212 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1670812 26725759 ~ 26735787 (+) False tmem254

Expression Profile