RNA id: XM_039783659.1


Basic Information

Item Value
RNA id XM_039783659.1
length 3510
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC120547882
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26926418 ~ 27109140 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCTATCCTCTCTAAACAGTGAAAGCAATGGTCCTGGCACAGAGTCCTGCTTTGCTTTCGGAGGGAGACTTTTACACTGCACAAAAGCTAGGGAAACACTCTTCGCTGAAATGAACCAGAGCCCTCGGGCACTCGCCGTGGATTAAACGGAAACTTTTACGATGGCTTTGAACGGGAAAAAGTAGCACGAGAGACAGAGCACGCTAACCGCCGCCGCCGACGGACCTTCTACTGCAAAGCAACTCCTTGTAGATGCACGGCCACTGCTGAAAAATATGCTCCAGCCGAGCCGCCTCAACCCCGGCTTCAGTGGCAAATTACCAGTGTTATAACCAGTTTCGTGAGACATTCGCCGGCATctatttgttttggttttttcccCCCCGCTCCTTACCTATAAAGTCCGCAGTACAAGTCCTCGACCCACCTGCGAAAAGAGAATTATGGCAGGGAAGCTGACAGCAGCGCAAGGCACAGGAATACTGCTGGTGACAGCCAACGTTGGATCTCTGTTCGAGGATCCTGACAATCTACAGAAAACATGGCTGAGGGAGTTTTACCAGACCGTACAGACACACAAGCCTCACTTCTTGGCAGTGCACTGCCAGGAGGTGGGTGGGAAGAATTATGAGGCATCAATGTCACACGTGGATAGTTTTGTCAAAGAGCTGCTGTCCAGTGATGCCATGAAGGAGTACAACAGAGCCCGCGTCTACCTCGATGAGAACTACAAATCCCAGGAGCATTTCACAGCTCTCGGAAGTTTCTACTTTATCCACGACTCTTTGAAAAACGTCCACCAGTTTGATTTCAAAGCCAAGAAATTCAAGAAGGTTGTAGGGAAGGAAACCTACTCAGAGACACTAGAAGGCACGCCCTCGCTGGAGAAGGAGAAGTTTCCACAGGACTACTTTCCTGAGTGCAAGTGGTCCAGAAAGGGATTCATCAGAACTCGATGGGCCCTGGCTGACTGCGCATTTGATCTGGTCAACATCCACCTTTTCCATGATGCCTCCAACTTGGTAGCCTGGGAGAAAAGCCCCTCCGTCTACTCTGGGACCAGGCAGAAGGCGCTGGGCTACGTCTTAGACAGGATCACGGACCAGCGGCATGAGAAGTTGCCGTATTTTGTCTTTGGGGACTTTAACTTCAGGTTGGACTCGAAGCAGGTCATTGAGagTCTCTGCTCCACTGCCACCCTGCAGACAGTCAGAGCCGCCGACACCAATGAAGTCGACAAGCTAATATTCCGAGAAAGTGACAACGACCGAAAGGTTGTTCTTCAACTTGAAAAGAAGCTTTTTAATTATGTCAACCAGGACGTTTTCCGGGAAAACAATGGGACCTCACTTTTAGAGTATGACAAAGAGCTGTCGGTGTTCAAGGATCGGCTGCATGAACTGGAGATCTCCTTCCCACCCAGTTATCCGTACAGTGAAGACAGCAGTCAGGGGAAGCAGTACATGAACACCAGATGCCCTGCCTGGTGTGACCGAATCCTCTTGTCTCCCTCTGCCAGAGACCTGGCCTTAAAGcCTGAAAATGAAGAGAAGTCTATAGTGTATGATAACATCGGGCCCAATGTCTGCATGGGGGACCACAAGCCCGTCTTCCTGTCCTTCCGAATAACAGCGGGGGCAGGGAAGTGTTGCCAAAGGGGGGAGAAGATATTCCGCGAAGCGCCTCTGTGAGAACACTGGAGAAACAAACcggacaccaacacacacacacacacacacacacacacacacacacacacacatttgcatgcaaacaaacacaaatagacacacacacactttgcacaAGCGTACACTGAAGAACCTAGACCAAGTTTTTCGGCAGTGCTGACCGGTTGCGGTTGTCCTGACACCAACATCCATATGAGCACCCAGCCGTTTTCTCTCCATAAAACACTTGTTGAGATGTGGACGGGCACCCGAGGGCCCGGGCTCCAGACAAGACACACATCGCTGACCTCACTGTTGCCATGCAACCCCATTCcccagagaagaaagaaaaagaaagaaaggaaaaaaagaagaagaagaaaaggaacGGACGGacgactcttttttttttttctccatgccACAGCCTCGTTGCCAAAACTCTAATTGAAATCAGTCCTACTACATACTTTTAGACACCGTACTTGCCATTTTTAGGTATGCCTCTATGTATAGAAGCTACTTTCCACACAGTATCTAAGGtgttttaagaaaagaaaagtgcaatgcaaaaaaaaaaaaaaaaagttgtatatcTTATATTGTTAGGTTTATTTGTACATTGGACAGTATAAGATAAGAGTTGTTCATGGTTTTTAGTGCCGTTCTCTTTTCTGACCAAACTTTGTGGTCCCTTCATGGAATAGATAAGACacttttctgtttattttaacaatttatatataaatatatacatttctttttgtttctgtttttgtttttttttgagttGTTGTGTGCACAACACACTGCTATGCCTGACACATCCATTGAGTCTCATTTTATATACTGTTCTTTTTAAAGAGATAATTTATAATTCTTACCAAAATGTTTATGCTGAAAGTGCGACTGTCTGGGAGTTCCTGCAGCCACGGTGGAACCTCGGAGGAGTCGGTGGGAGAGGAGCCAATCAGAAAAGAAAAACCAACTGTTGTGTGATTTATTGCCTGTCCAGGATTGTTTAAGCAGTGCCATAGACCATGCAAGTATATAAGATAATGTTTCCTATATAGCACTCTCACATTGTTATTCTTACTCTAACTTATTTCTATAATATTATGGTTCTGAATGTGATATTTTTTAGATAGGCTTGGGTATCTTAAAAtgtaaacttttattttatttttttcctgtgtCAGTTTTTGTTACTGCATTACGGTGCCAAGTATcctacacagaaaaaaagtgtgtaAGAGTTATAAAATACTTAAGTCAGATGGTAAAGGTATTGAttgtgtaatgtaaaaaaaaaaaaaaaaaaaagaaatggggaGAAACTCTAAACGCAGAGCAGgaagacttgtgtgtgtgtagccttcATTGCAAATAATTAGAGCATTAAAGAGGCGATAAGAGcggttcttttttttgtatcgATTTCGTTTACTAGGCCTACACTACAGAGTTCAGACTGTGTGAAGCCGTCACATTGATCCTTACGggaattcttttttctttttcttttcttttttaaatctaagTCACAATCGCAAATGGAAATGATTTTGTGCCTGCTGCAGAATTCATGTTGTCTTGTGTGATTTGgggtttgttttctgttttcttgttgtaaaaaaaaaaaaagcctgcttGTTTTTGTTCCTGCTGGTCATTGTGAGTATACTGTAGGAATATAAGCcgcaattattattttttttcttcactccatcttataaaaaaaaaaaagcagataaGAGATTTTATTCTAGCCCCTTCCGGCCTGGGCCTCTACTGTAGGTGATGCACTTCTCAAGCAATAAAAAACCCATTAGAGCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267570 lncRNA upstream 180333 26740257 ~ 26746085 (+) True G197069
TU267571 lncRNA upstream 183271 26740257 ~ 26743147 (+) False G197069
TU267520 lncRNA upstream 298716 26624635 ~ 26627702 (+) True G197035
TU267521 lncRNA upstream 299637 26624635 ~ 26626781 (+) False G197035
TU267513 lncRNA upstream 386283 26539844 ~ 26540135 (+) True G197029
TU267599 lncRNA downstream 16243 27115966 ~ 27116514 (+) True G197087
TU267601 lncRNA downstream 42848 27142571 ~ 27142786 (+) True G197089
TU267660 lncRNA downstream 165556 27265279 ~ 27265508 (+) True G197137
TU267667 lncRNA downstream 199445 27299168 ~ 27299994 (+) True G197143
TU267671 lncRNA downstream 200387 27300110 ~ 27301368 (+) True G197146
XM_039784217.1 mRNA upstream 41984 26874215 ~ 26884434 (+) False pwwp2b
XM_039784218.1 mRNA upstream 41984 26874217 ~ 26884434 (+) True pwwp2b
XM_039783000.1 mRNA upstream 52750 26865808 ~ 26873668 (+) False LOC120547537
XM_039784914.1 mRNA downstream 77245 27176968 ~ 27206666 (+) True valopa
XM_039784380.1 mRNA downstream 352227 27451950 ~ 27511592 (+) True LOC120548261
XM_039784381.1 mRNA downstream 378783 27478506 ~ 27511592 (+) False LOC120548261
XM_039783993.1 mRNA downstream 455205 27554928 ~ 27781041 (+) False LOC120548047
XM_039783992.1 mRNA downstream 455206 27554929 ~ 27781041 (+) True LOC120548047
TU267563 other upstream 190631 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 262633 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 943580 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 1101741 25817251 ~ 25824677 (+) False LOC120548053
TU267128 other upstream 1305743 25613407 ~ 25620675 (+) True prdx3
XR_005637159.1 other downstream 2012965 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 2013159 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 2248702 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 2436796 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 2495569 29595292 ~ 29596825 (+) False LOC120547718

Expression Profile