RNA id: XM_039783783.1


Basic Information

Item Value
RNA id XM_039783783.1
length 5144
RNA type mRNA
GC content 0.59
exon number 36
gene id LOC120547952
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 31342959 ~ 31493220 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgggaggggggtggggggagaagaagacagcggagcagcaagagggagaaagagaggctgAAAACGGCCACCAGGAACCGAAGCGCTACCACCACCGCTGCTTCTACTACCACAGCTAGCACCGACACTGCTGCCACCGCCGCCGCCGCCCTGGCTGCCCCCCGCCACCGCCATGGGAACTCCGCATCAGTCTCTCCAACCGCCGCTTTGTCCGTGGGCCATGTCGTGATCCGTGGGCTCCGCCAGCGGGTTTTCTATCCGTGATCCCGACCgaggcgaggaggaggaggaagacgacGAGGAgtaggagggaggaagggagggaaggTGGTGGTGCTGGGGAAGATGTTCGCCTCGGTGGGCCCTCGGGGCGGCCCGCGCCCACCCGTAGCCCCGGCTATCCCGGAGCCGGACCTGAGCCATCTGACGGAGGATGAGAGGAAGATCATCATGGCTGTACTGGCTCGGCagcgggaggaggaggcgaaggAGGAGGCCATGTTAaaAGAAGAGCAGCCTATCAAAGCAAGAACGGTGAACCTGGTTGGGCAGAAGAAACCGCAGCAGCAAAATGACGTCCGAGGTATCCAGCAGCAGTTGTCCAGCTACAGGGAGACGGTGATCCGGCAGGCTACGGTGGCGGCGGGCTCGGCTGTTCACCGGGACGACGCGCCAACCTGCGGCATCTGCCACAAGACCAAATTCGCAGATGGCTGCGGGAACCTGTGCTCGTACTGCCAGACCAAGTTCTGCGCCCGCTGTGGGGGGCGAGTGTCGCTGCGCTCCAACACGGAGGACAAAGTGGTGATCTGGGTGTGTAATAACTGCCGGAAGCAGCAGGAGATCCTGACCAAGCCAGGCGAGTGGTTCACCGGTCAGGCTGGGAAACCCGCTGGCCTCGGTTCAGCCGTCAGCGAGCCGTCTGTGTGCCAAACGCTCGGGGACAAGAAGCTCCGCTCTCGTTCCCAAGCACCCCCGGGCTCCACCACCGCGATCCAAGACCCCAACCGACCCAGCGCACCTGGGACCGCACCTGGCACCGATGCCCGGTCACGCAGCGAACCGCCACGAGACACGAGAaatggaaggggaggaggaggagctggtCGCGGAGAGCGCCGGCCAGGTCAGGCCAGGCTGCAGACCCAGGTCTCCATGGACCGGGACATGCGGGGGGAGTCCAGGGAGCGCAGGGAAAGCCGGCGGCTGACAAAGGGACGCTCTCTGGAGCATGATCCTGTGGGGGGAAATGGTGGAGTGAGACGGACAGAAGAGGGGGGCTACCACCAAATGGACCACAGCGGTGCCCCCCCTCGCCAAGCAGGGCCGGTCCCTCCTGGAGGCCGGGGCCACCCTGGGCCTGTGCAGGGTCGTGGCGTAGTAGGGGACGTTGGGGATGGCGTGCGGCCTGGTCAGAGGACGGTGGGCGGGGTTGGCGGGCCACATGAACACACCCTTGCTCAGCAGCCCCCTCCCCCTGAACTCCGAGAGCCTGGGGGTTCGGGCCCTGGCTTGAACCCCGGCCAGGGACCCGTAGCGAGACGGACCAAACGGGAGAAGGCCGAGAGCATGCTGCGTAATGATTCGCTCAGCTCTGACCAATCGGAATCTCTGCGTCCGCCACCGCCAAGGCCCTACAAGTTGAAACGGGGGCTGGGGGCCGGAGTGAAGAGGCAAACCAGCGTCAGCAGttcagaggaggagggagggaccACGCCCGAGTACAGCAGCTGTGAGGACGCTGAGATCGAAAGTGTCAGTGAGAGAGGTGACTGGGAGTGCTACCCCCATGACCCCACTGTATGGCATCATCCTGTAACCTGGCAGCCGTCCAAGGAGGGAGATCATCTGATTGGAAGAATCACCCTCAGCAAACGGAGCGCCACCATGCCTAAAGAAGCCGGAGCACTGCTGGGGTTAAAGgTGGTGGGAGGCAGAATAACAGAGTCAGGGAGATTAGGTGCCTTCATCACTAAAGTCAAGAAGGGGAGCCTGGCTGACGTGGTGGGACATCTCAGAGCAGGGGATGAAGTTTTGCAGTGGAACGGGAAGCTGTTACCGGGGGCGACCATGAAGGAAGTTTACAACATCATCCTGGAATCTCAAGCCGAGCCTCAAGTGGAGCTGGTGGTATCCAGGCCTATTGGGGTGTATAGAAAATATCATGATATCCCAAGAATCCCCGACACGTCCCACCCTCCATTAGAATCTACAGGTTCCAGTTCTTTTGAGTCCCAGAAGATGGAGAGACCATCCTTAAATGTCCTGTCTCCCTCCAGTCCAGGGATGCTCCAAGATGCTCCACAGTTAATGCCAGGGCAACTCTCAGTGAAGCTGTGGTATGACAAAGTGGGTCATCAGCTAATCGTCAACGTCATGCAGGCAGTAGAGCTTCCTCTTCGGCCTGACGGGCGGCCCAGAAGCCCCTACGTCAAAATGTACTTCCTCCCTGATCGCAGtgaCAAGAGCAAACGAAGGACAAAAACTATGAAGAAGACCTGTGAGCCCAAGTGGAACCAGACGTTCGTCTACTCTCATGTCCATCGCAGGGATTTCCGCAACCACATGCTGGAGCTGACTATATGGGACCAACCCAGGTCACCGGAGGAGGACAGCACCTTTATGGGAGAGATCCTGATAGAGCTGGAGACGGCCTTACTGGACGACAAGCCTCACTTGTATCCACTCCAAACCCATGACGTCTCATCCATACCGCTGCCCCGACCCTCCCCGTACCTGCCCCGGCGACACACAGAGCCCCCTGGCAAGAAGCTGCAGCGTTCTCAGCGTGTAACAGAGCCTGAATTTGATGAAGGTACAACAGTAGTGTCGAAAGCAGCGGATGGGCGTGGCAGGGAGAGGCAGCGAGAGTCCACGTCTACCCTGGAGGTGCCGGACCAGCAGAGGACGCCCTCCCATCACATACGTTCCCGCTCGGTCTCCCCACACCGCGAGGAGCAGGGACGAATCCGCTCACGGCCACCCAATGTTCCCGCCCAGAGGAGTCTGGATAATGAGCTCCCTCACGCTCGTCGTTCCCGTTCTCCGGCCCGTTACTATGACGCTGCCAGAGGCCGCCACCATGAGCAGGAGTACCTGGATGACAGCagTGAGGTCATCATGATCCACCAGTCAATGCGAGGCAAAAGTGCAGAGTGCCTCCACACCAGGAGATCTACTAGGCACAATAACACACTGCCACCTAAGATGCCCCTTTTGTTCAACGGTATTCCCAAACATTCAAACAGTTCCACGCTGCCTGCATGTCGAAACATACGCTCTGTCATGGGATCTCACTTGTTCATGGCAAAACGCAGCTCCATCACACGCTGCGCTGTAATGTTCCCAGATGAGGTGACAGTTTGTGATCTGCAGCCTTCTCTGGACAGGGTTAGGAGCGCTAGCGCCAACTGTCTGACTCCAGACAATCATGCCCCCTCACCAGAGACTGAAAGAAAATCTTTGTCCCATTCCCTGCCCCGGAGACGTCCGGCAAGCCCCAGGATTCTTATCCAACATGCTTCCCCTGAAGATGACAGAATATGGATGCCACTTCCTACTCAAGAGACTTTAATTCACATCAGTACAAAgaagagGCAGCCTCGGACCTTGGAGGTACCTGTGTGTCAGGCTCCTGGCAGGAAGCTCCCTGACAGTGGCAGGGGCCACCTCCAAGGCGGTGCGTCTCTTTCCTCCTCAGTGACGTCCTCCTCAGCCCGCAGATCGAGGCAACTCCCACAGCTTCCCCCCCAGAGCAGCACCGTAGAACAAGccctgGTAGCAGAGGAGTGCGTTCGTCAGCTCCAGATGAGGGTTCATTCCAACCGGGCGTCAGCTGCTGCCACCACCTCCAGCCAGCAGGACCTGGACCGAGCCCTCAAGAACAAACGGGAGCTCTACAAGGACCAGAGGAGGAGCAGTGAGAACATTTCCCATAAGTCCTCAGACAGTGATGTCAGCGACGTGTCAGCCATCTCTCGAACCAGCAGTGCCTCTCGCATCAGTAGCACCAGCTACATGTCCATCCAATCAGAGAGACCCCGGGGACGcttcagCAGGGCCATGCGCGCAACGGGCCGCCACATGATGAAGAGCACCAGCGTGAGCGGTGAGATCTATGGCATGGAGCACACCGATGGCAGCCAATCAGACACAGCGCTCGGGAGCCTGGGAAGCGGGATCAAGAAGCGACGCTCGAGCCTCAGCCAACGTGTTGTTGCCATCCTGCCATCCAGACGCAGCCGGAGTACCTCACAACTCAGCCAGACAGAGGCGGCGGGTAAGGCGGCGGACAGACAGAAAGCGGCTTCAGCAGGTAAGAAGGTGGGCAAAGGCGGCAGCAGCATCCAGAGGAGCGTGGAGACGGGCATGGCTGTGGAATACCCACGGGGAGGGTCGGGCATGAACCGGCAGGCCAGCAGAGAGTCGACTGATGGCAGCATGAACAGCTACAGCTCTGAGGGGAAtctgatcTTCTCAGGTATGCGGTTGGGTGCCGACAGTCAGTTCAGTGACTTCCTTGATGGTTTAGGCCCCGGTCAGCTGGTTGGCCGGCAAACACTGGCCACACCTGCCATGGGTGATGTTCAGATCGGTTTGATGGATAAGAAAGGCCAGCTGGAGGTGGAGGTGATCAGGGCACGAGGCCTTACCCCCAAACCAGGCTCCAAATCCCTCCCAGCTCCCTATGTCAAGGTGTACCTGCTGGATCATGGAAGTTGTAAAGCCAAAAAGAAAACCAAGATTGCACGCAAGACGCTAGAGCCGCTCTACCAGCAGCACCTGCTCTTTGAGGAGAGTCCCCAGGGCAAGGTGCTTCAGGTGATAGTATGGGGCGACTATGGACGGTTGGATCACAAATGTTTCATGGGTGTAGCACAGATCTTGTTGGAGGAGCTGGACCTGTCAAGTACGGTGATTGGCTGGTACAGACTGTTTCCGCCGTCCTCATTGGTGGACCCTACGTTAGCTCCGCTCACGCGGCTGGCGTCTCAGACGTCACTGGACAGCTCAGGACCGCCACCGGGCGTTCGGTCCTAGTGACCGAGTGGCGAGCGCAAAACCTTCGCCCAAATATCCCTCAAAGTGACAAAACAATGGACCACAGCTGCTGGACCAGAACTGAGCCGAGGGCGAGAACACGG

Function

GO: NA

KEGG:

id description
K15291 RIMS1, RIM1; regulating synaptic membrane exocytosis protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268688 lncRNA upstream 91089 31251389 ~ 31251871 (+) True G198004
TU268686 lncRNA upstream 100678 31240945 ~ 31242282 (+) True G198002
TU268674 lncRNA upstream 136604 31206091 ~ 31206356 (+) True G197991
TU268666 lncRNA upstream 140487 31200856 ~ 31202473 (+) True G197983
TU268665 lncRNA upstream 142960 31198955 ~ 31200000 (+) True G197982
TU268785 lncRNA downstream 131788 31625008 ~ 31625225 (+) True G198082
TU268792 lncRNA downstream 255453 31748673 ~ 31748908 (+) True G198089
TU268793 lncRNA downstream 359070 31852290 ~ 31852614 (+) True G198090
TU268794 lncRNA downstream 435549 31928769 ~ 31928980 (+) True G198091
TU268798 lncRNA downstream 455401 31948621 ~ 31948925 (+) True G198095
XM_039784893.1 mRNA upstream 144269 31183320 ~ 31198691 (+) True ogfrl1
XM_039784116.1 mRNA upstream 337937 30711573 ~ 31005023 (+) True LOC120548109
XM_039784117.1 mRNA upstream 337937 30711573 ~ 31005023 (+) False LOC120548109
XM_039784239.1 mRNA upstream 671776 30625630 ~ 30671184 (+) True slc1a4
XM_039784235.1 mRNA downstream 19644 31512864 ~ 31573621 (+) True bcl11aa
XM_039784236.1 mRNA downstream 19644 31512864 ~ 31573621 (+) False bcl11aa
XM_039783866.1 mRNA downstream 951867 32445087 ~ 32483666 (+) True fancl
XM_039783509.1 mRNA downstream 1163766 32656986 ~ 32659866 (+) True LOC120547814
XM_039783143.1 mRNA downstream 1168867 32662087 ~ 32666672 (+) True LOC120547622
TU268683 other upstream 108237 31234364 ~ 31234723 (+) True G197999
XR_005637093.1 other upstream 1141140 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other upstream 1141179 30153511 ~ 30201781 (+) False LOC120547658
TU268204 other upstream 1723944 29536519 ~ 29619016 (+) True LOC120547718
TU268894 other downstream 1300068 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 1469168 32962388 ~ 32965074 (+) True G198245
unassigned_transcript_1124 other downstream 2209066 33702286 ~ 33702357 (+) True trnaw-cca_27
XR_005637201.1 other downstream 3381230 34874450 ~ 34874577 (+) True LOC120548589
TU269549 other downstream 3451052 34944272 ~ 34948428 (+) False LOC120548523

Expression Profile