RNA id: XM_039783830.1


Basic Information

Item Value
RNA id XM_039783830.1
length 6317
RNA type mRNA
GC content 0.43
exon number 3
gene id sertad2b
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 30506054 ~ 30600609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCGAGCGGAGGCACTTTTCTCCTCCTATCAGCGCCATTGTGTGACAGAGTCTCGGGGAGCGAGGAGGACGGTTTGTCCTTCTGTAGCCGACAGGACTCTTTAAATACCCTCCATGTTTCTCTTTCAAACTCCGGCGGACCTGGATGTGACCGACACAGTGATGCAGTTCGGGGGTCTGTCTGTATTGGTCAACTGCATCAGCTGGCCCTCCCTCATGATCCTCTTCCCTGCCAGGGTTGGACGCCGGTCGGACACTGCCAGGCGTTGCTACCAGCAATGGAAATTAATTCAAAGATACCGGAGTTTAAATGTGATTTAACCAATCCACCGacaaaagagagcgagagagaaggagagagagataaatagAAAGCACGTGCATGGGTGATCAAGAACGATGGACAGACAAAGAGGGGAAACTGAAACGGAGCTTTTATCTGaTATATGTTCGGTAAAGGTGCGAAGCGGAAGCTGGACGAGGATGAAGAGGGGCTGGAAGGCAAAACGCTGGAGGCACCGGTGGCGGGAGGGGGAATAGGCCTCGGTCCGGAGGGCCTGTCCAAGGTGTCGTACACCCTGCAGCGGCAGACCATCTTTAACATCTCCTTGATGAAGCTGTATAGCCAGCGGCCGCTCGGCGAGCCCAGCCTGGAGCGCCGCGTTCTAATCAACAACATGCTGCGACGCATCCAGGACGAACTCAAGCAGGAAGGCTCCCTGCGGCCACTGCTCTTGCCACCCTCGCCGCCTCCCGACGACCCCATGGACGAGGGTTACCGTGAGGCGCCGCCCtcctttggtgttttgtcaGTGGCATCGGCAGCACAGGTATCCCAGCCTTCTACGCTGTTGATGCCGGTGATCGTTCCACCGCCTTCACCCCACCCAATGGTGCCTCCCAACTGCCAGGCATCCCAGGCCTGCTCAAACCGTGTGGAGGCCTGCCCCGCCCCTCTGGAAGCCTGCCTCACTCCAGCCTCTTTACTGGAGGAGGATGGTGGAGATTCAGCCTTTTGTACTTCATCCCCACCCACTCCTCCTCTGTCGCCTCCACCGGTGCAGCCTCCTCCGTTACCTTCGGCACTTCTGAGCCAGGTGTCCCCCGGGGTCCCTGTGCCCGCCTCGTCCAATGACAGTTTCCCCTCCGCTCGGAGTGACATGGAGTTGTGTACTTCCACAGCCATAACAAGAACAGAAGCAGCTAATACTACGACCGTGACTACCTCCCCAGCTCCCACGCCACTCACCCAGCCCTCCCACTTAGCAGCCCTCTCCCCAGCACCCAGAGACTGCAGGACAGTGGGTGCTAAACCAGAGGCAGCTGGCGTCTTGCTAGCCGAAGCCTGCTGTGCCGATCTCCGGCCGATGGACACTTTGCCCACACTGCCCCCTGTTGGCCTAGTAGAcatttcttcctcttcctcttcttcctctccctcggGGTTTCTCTCAGACTTGGCACTGGACGACGTCCTGTTCGCCGACATCGACACGTCCATGTATGACTTTGATCCCTGTACGACAGCGGGGGCTGTGGGCGCGGCGGCAGGTGGTGGACTCACCAAACTGTCGCCGGTGGTGACGGCGGACGACCTCCTCAAATCGCTGGCGTCGCCGTACAGCGGCCCTGCCCCCCAGGTTTCAGCCAATCAGCCTTTCAAAATAGATCTGACAGAACTGGACCACATCATGGAGGTGCTGGTGGGCTCGTAACTCGCCAACACCACCacctcagaaacacacagacagtttcATATGGCGAACAGACTGGAATGAACTTTTGGGATCGATTTGGTTATTTTCCtgattgttgtttttatgtttaaaaaaaaaactctcttcaAAGGTCGGTAATTGTAAACGTCGATAGTGATGTCACTTAGTACTACTATGACAACTACTACTACACAACACTGTGCATGCACTGTGCTCGCCTTTCCAAATATGGAAAAGAAGTAACCGGgaaacaaagagacacatacatTTGTATTTCTATATTTGTGAGGACCTCCATTGATTCCATTCATTCCCTAATCCTAATTTAAACCTAATCATAGTTTTCCTCTTTAACCTGAACCTAAGCCTTAATCCTAAAAGTAACTGTAAATAGAAAAAACTAATTGTGAAAAATTGTCCTCACTCTGGAGGATTTTTGCAATCATTCTATCCTTGTACTCCTCACAGGTATAGTAATACAAGTGaacacacatagacatgacacacacacacacacaaacacactgaaatcATGGCTTTTAGCAGATGAGTGCCTTTCAAAATGACCACTTCTTCAATTCctgttttacagtattttttttctagTTCTTTTCACTTTAACAGCCTAGAGAGGTCAAtcctcaatgtttttttttatttattatattgtgTTAAAACTATTATTAAGTAAGGTAATTTGTTATGatcaaataataattatttaatctttatcttattacatatgctatgttttatttgtaaagcaagCATAAAAAGGTTTTACAAGGAATACATTGTTTTGTCAGTGTGCTACATAATATATTAGTCAATATAATCACGCTTGGGAATAGCTCTAAGACACATTGCCTGGTTGTTTGTTAAACTCATTTTGGTAGAAGGAAATGTCTGTTCTTATACACATCATGTCTATGAATTCAGttcaggactttttttttttattggtagGCAGGCACATATAACTGTGCTGGATGCTTTTTTACATGAGCTCAAACTATGGTCTAGTTATCACGCTTCACTTACAGCATTCAAATGAGCTACACCCACAGGAAAGCTTGATGTGTTTACATTGGAAGCGGCAGCTGCGCCACCACCAACTCTTGCCTCCCAGTTGGATGTGGATGATCTGAAAAGTCCAACGTGAGCAGAGACTTTAGGctgtaaacacatttttgtgaCTGTGGACTCAAGACAAAACAACTATCACAGATTGCATAGAACTTCTCAGAATTACACCAAgaaaattttatattttagttttacaTGCCCTATTTTTGGTTTGGGTCCTACATAATTAGCACCATAAGTGACGGACAGAATACAGCACTGCAtacagtattacacacacatacacacaatttgCAGAGTATGTTTACTTGTGATTAGAATAGGAGGCCTATATGCCAAATCTCAGGGTTCTGCTCTCTTCTGTGCATTGTGTTGTGCAGTTTTGATGTTGACCCCAAAGCCCAGGTATGTTTTAAACATATGATAGCAGGAGAGCTAAATCTGGCTTGTGAGGAATTTCAATGTGGATTTCCAATGAAGTAGgaaacccaaaccacaatgttAACCTGATACTGCAACGATGCAAAATACTAATTGTTTCATAAACCCTACCCCCCTGCACAGCACAAGCCACTATGCATGATCTTTGATTTGACCCAAAAAGACAAAATGTGATGGCTAAGTGTAGCTTCTAAGATGAGGGTCATATGAGGATTCCTAAAGTCCacatgcttttttcccccagcagaCCAAaagcttgcacacacacacacacacacacacacacacacacacacacacacacacagagttttaGCAGCCATGCTATGTCCATATTCAAGCCTTTTATATGATATCTATTGAAGCTAGAAATACTCCTATTTACACAAATTTCGATTACCTTTAAAAATTAAGTTGATGTTATTTTAACTAACTGTCCCCAATTCACAGATTTAGCTATTAACTGTGGTTTTCCATATGAAAAGGGACAACACTATATGGAAGAGATATTTGGAGTAGAGGCAATAGGTTGAAAACAGCTGTGTCACAGTCTCCTAAATCTACCTTCTCAGACTGCTGACCTTCATAGAAACCACACAACAAGCTTTTGCAAGGTCACAGTGTCACATAATTTGCACAAAGTCCATTCTGAATGAGGCACCAGGATAGTTGTAGATAAGGCCAGTAGTAGACACAGACATTGGCAAATCACAGACCTACCATATTTCCTAGTAATGTAAAAGTCATACTGGCTACAGGACTACGGGATAGAATAATTTCTAAGGTGCAGATACATTATGTACATTAAGGGTCGatggaacaaaacaaaaagttgtaAAATACCTTTTCTTGCGGCAATATTCAGAAAGACAGAAGCAGTGAGTCAGCAAAAGTCAGACTAACTCACCTTGCCTCTTATAGCCACACAATGCAATGAAAGTTGAACTAATCGGCtcaaatattaaaaagaaaaatccacacTGGGATACTTTTATACATCACCAGTCATATGTTCAATGCATTTACGGACATGCTGTGTGATGAAGTGTAATTGTCTTGAGGCTACTCTGGGTGAAATTGGATTATGCCTCCTGCTTTTTTAAAAGCCCTCAGTTTAATGTTTAAAACTGTGTTCATAGGTTTTTTTAGCCACGTGTTGACAACAGAACGAAAAAAGATTGCTGCACATTAGTATTCATCTGGAATTCTGTCTCTGGCCACCTGATAATTGCAAGTTCCATATTCACTCTCTTTCAggctgttttggtctccaccaacggCTGAAGGGGGGACACATCTGCCTCTTTAGCTGGTAATATGCTCCATTATGTTCTGCAAATGTGTTGCTTCGCAGTGTGGGTTTATCAGAGTAGTGggccagaaaaccaaaacaatgagctaaaacaCTCCGTAGAACCAAGGGGAATGCACTACAAACGACACCTTACACATTATGCGTAATCATTTGATAGCAATAATAAATGTATTGATGAGTGCAGCTTTAATGTTGACACCAAACATTGTAACTGCTGTGCCCTGTATCTTATCATCAGACCCAAACaaaatctgctgttttttttaacagttttcagcagtgatccagaatgaaaatctgcggAATTTAGCGGACTGCTTTTCTGCTTAGGGTGGAGATGTGTATGCATTCtgagctttatttttatttgtttaaaatctgcagGAAATCTGCGGTAAATTCAGCATCCATAAATTCTCTGTGGTCCTGCTTATCATTATACATATCATCTACATTTGTCTAGCTTTTCTCAGCAATACACAGTAAGAAAAAGACACCACAGATAGACACTGCAGTGGTGCACAAATGCACATCACCAACAGGGTGGTTTTTTTCCTTCAAAAGTACTCAAGTATCAAATAGAACAAGAAAGCCTAAACACTTGTGTGTCTGCCAACACAACCTTGCTATGGTGTAAAATGGTATGTTAATGGTATTTCTAGCAGAAGTCCCAGCTGGTGGGACCCAGTAGTTGTTAATGGGACAGAACGTGTTATCTGGACTGACTCCTCTTGCTGTGGTAGCCAACAGCAGTGAGGTCAGGGCGGTGTTGAAACTTGTTCCAATTGAAGATCATTAGTTTCCCAGCGTGCATTTGACCGTAGCCAGTACTTAAATGAAATGCATTTGAACTGAATTCAAAGCAGAGTGTGAGCCCGAGCAGATAGCAGCACCAAGTCATGCTGTCTGTAGATGACTGTGTCTTGTTTCTTTCACTATGTTTGGATTTTGGAGtgcttgttttttcttttgtctatgaagttatttattcatgttgtctttcttttctgtgtaaatatatttatttttgatgTGAAGTGAACATTTGGATTGTAAATGTGTGTACAGAATGTGTGGTAGGAATGTATTTCAGATAGGAATGTATCTGAGCGTGGAATTATGGGTggaagccatttttttttatatatacataggTAGTTCTATgatgttgtttatgtttgtttgttgctttGTTATTGATTTTTGTGGGGTGGCGGCCACAACTTTTTACATCTTTTctactcttttattttttttatttttttattttattcatcttTTTCCAGTTGAAGGCGAACAGATCATGCAGCAATACTCAAAAAACCTGTCTCCAACCTTCAGATGTCAAGACTCCAAAGCCTGTCATAGACGCTTCAATGCCAAAAGTAATGTACATAGTATGAACAGCATTCAAGCTCCTGAGACTTTATCGATCAGTGTTTGTTACCGAATCTGTTTTCGCGCTGTCCGAGCATGTGGCGGTTCCGAATCGCCGAGAAAGACTGACCGCAGTCGAGGCTGATTTCCTCTACGAAGGCTGTATTTTACACAGACCTCAGAGCTGTGCCTTTTTCTATGCAatagaacacaaacacagagagaaactaTCAGCTGATCACTGTATTGGGATCCAAATGTGGACTGTAGAtaaaaaatatatgtgtgtatatatatatatatatatatatatatatatatatatatatatacagatatatatagtatatgagATAAATGGACTGCTCTCTATGAATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268566 lncRNA upstream 79117 30488250 ~ 30488558 (+) True G197889
TU268564 lncRNA upstream 80262 30487115 ~ 30487413 (+) True G197887
TU268562 lncRNA upstream 84246 30483208 ~ 30483429 (+) True G197885
TU268560 lncRNA upstream 85262 30482132 ~ 30482413 (+) True G197883
TU268554 lncRNA upstream 90101 30477340 ~ 30477574 (+) True G197877
TU268586 lncRNA downstream 45794 30646403 ~ 30647320 (+) True G197909
TU268531 lncRNA downstream 73603 30674212 ~ 30674482 (+) True G197854
TU268641 lncRNA downstream 349751 30950360 ~ 30954271 (+) True G197958
TU268665 lncRNA downstream 598346 31198955 ~ 31200000 (+) True G197982
TU268666 lncRNA downstream 600247 31200856 ~ 31202473 (+) True G197983
XM_039783506.1 mRNA upstream 231515 30267788 ~ 30336160 (+) True nvl
XM_039783188.1 mRNA upstream 365894 30153511 ~ 30201781 (+) False LOC120547658
XM_039784239.1 mRNA downstream 25021 30625630 ~ 30671184 (+) True slc1a4
XM_039784240.1 mRNA downstream 31858 30632467 ~ 30671184 (+) False slc1a4
XM_039784116.1 mRNA downstream 110964 30711573 ~ 31005023 (+) True LOC120548109
XM_039784117.1 mRNA downstream 110964 30711573 ~ 31005023 (+) False LOC120548109
XM_039784893.1 mRNA downstream 582711 31183320 ~ 31198691 (+) True ogfrl1
XR_005637093.1 other upstream 365855 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other upstream 365894 30153511 ~ 30201781 (+) False LOC120547658
TU268204 other upstream 948659 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other upstream 970850 29595292 ~ 29596825 (+) False LOC120547718
TU268132 other upstream 1217747 29348425 ~ 29349928 (+) True G197531
TU268683 other downstream 633755 31234364 ~ 31234723 (+) True G197999
TU268894 other downstream 2192679 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 2361779 32962388 ~ 32965074 (+) True G198245
unassigned_transcript_1124 other downstream 3101677 33702286 ~ 33702357 (+) True trnaw-cca_27
XR_005637201.1 other downstream 4273841 34874450 ~ 34874577 (+) True LOC120548589

Expression Profile