RNA id: XM_039783866.1


Basic Information

Item Value
RNA id XM_039783866.1
length 1501
RNA type mRNA
GC content 0.52
exon number 14
gene id fancl
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 32445087 ~ 32483666 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGACGTCAgcggttttgttttttcatggcGGGATGCGGGGTGGTTTCAACGTCGACTTTGTCCTGACTGCGTCGTGGCTAAAACCGAGTGACTTCTCGTGATTTAACAGCTTTAATTGACGTATCTAAGTTCAAATGTTTGGTTCAGGCTGCCGAGttattaaaacaataataataattaaaagcGCTGCTAGTCTATCCTGTCAGGCTTGCTAAAGTTAGCTAAGGAAGCAGTCCTCCTGGTTTGACAGCTGGCTTAAAGTTTGACTATTGACGTTAAGATTAGTGCGATGGAGAGTCCATTGGTAAGAGACAACCCACTGCTTTTACCTTTCAACAAGGAGAAAACTATCTACGACGGCTTCATCACAGTCCAGGAACGGGACTTCAGATTGAGAATACTTCTCCCACCAGATCGCCAATTTAAACGGGCCAGGCTGCACTGCTGTTGGCAGTTAAAACACCTGTTGCATGGCTATGAGCACATAGTGAAGCAGAGGCTGCAGCAGTCGGCTGATCTTGTCAGTTTCATTCTGGAGCTGAAGACCATCTTGGAAGTGGGTCTGAAGAGCCATCGGGAGTGCCgctccatccctcctccacaGTATTACTCTCAGCTCATCTCTGAGATGGAGACCCTTGGGTGGGGCAAGCTGCTCTTCATAGACACAGAGTTCCGAACGTTGAGACTGAAGGCGGAGGACTCCTGTGGAAGGCAGCACGTTCTCACTATTAAACTCAAGTCTAAGCACCCTGCAGAGGCTCCTGAATGCTCAGCTGACCTGCCGGTCCCTCTGGCCATGACCTGGACTCCACAGAGTACTCTGGACCAGCTCCACAACCAGTTCCTGCTGGTTTTGGAGTCCCTCACCGAGTTTTGGGACGTCCTGGACGAGATTGACAGTAAGACCTGGATCCTGGAGCCGGAAAAAGCCAGCCGGTCCGACACTATGAGGCGGATCGCCATCGgaAACAACGTATCCATCAAAGTGGAGGTGGATCCCAGACACCCTAAGATGCTACCAGAGTGCTGCCTGCTGGGGGCCGAGCATGtgGTGACTCCGCTGAGGAATAAGCTGAACGCCAACATGCACTTGTGGAACCCGGACTGCAGCGTCTTGCACAACCTCCGGGATGTTTTGGAGATCGAATTCCCGTCACCTGCCACCCACGAAAAATCTagtTTCAGCGTTGAGTGTGGGATCTGTTACTCCTATCGTCTTGATGCTGCGATCCCTGATCAAGTGTGTAATGACCCTCGCTGTGGCCAGCCCTTCCACCAGGCCTGTCTGTatgagTGGCTGCGAGCGCTGCCCTCCAGCAGGCAGAGCTTCAACATTGTTTTTGGAGAGTGTCCTTACTGCAGCAAGcCTATTACTGTGAAAATGGCGGCCCAGAAGTGATGAGAAGTGGCTTTGTGTTCCTGTCGGCGGCCACCTCGACATTTGGGAAACGGCTTGAGAGACCATGCAGAAACTAGCAGACCCCACACACTGGCCA

Function

GO:

id name namespace
GO:0048599 oocyte development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10606 FANCL, PHF9; E3 ubiquitin-protein ligase FANCL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268803 lncRNA upstream 2348 32442532 ~ 32442739 (+) True G198100
TU268798 lncRNA upstream 496162 31948621 ~ 31948925 (+) True G198095
TU268794 lncRNA upstream 516107 31928769 ~ 31928980 (+) True G198091
TU268793 lncRNA upstream 592473 31852290 ~ 31852614 (+) True G198090
TU268792 lncRNA upstream 696179 31748673 ~ 31748908 (+) True G198089
TU268833 lncRNA downstream 98054 32581720 ~ 32583279 (+) True G198126
TU268842 lncRNA downstream 129006 32612672 ~ 32613005 (+) True G198134
TU268846 lncRNA downstream 142507 32626173 ~ 32626511 (+) True G198138
XR_005637162.1 lncRNA downstream 146648 32630314 ~ 32632849 (+) True LOC120548258
TU268855 lncRNA downstream 156320 32639986 ~ 32640929 (+) True G198147
XM_039784235.1 mRNA upstream 871466 31512864 ~ 31573621 (+) True bcl11aa
XM_039784236.1 mRNA upstream 871466 31512864 ~ 31573621 (+) False bcl11aa
XM_039783784.1 mRNA upstream 951867 31342959 ~ 31493220 (+) False LOC120547952
XM_039783783.1 mRNA upstream 951867 31342960 ~ 31493220 (+) True LOC120547952
XM_039784893.1 mRNA upstream 1246396 31183320 ~ 31198691 (+) True ogfrl1
XM_039783509.1 mRNA downstream 173320 32656986 ~ 32659866 (+) True LOC120547814
XM_039783143.1 mRNA downstream 178421 32662087 ~ 32666672 (+) True LOC120547622
XM_039783203.1 mRNA downstream 295850 32779516 ~ 32783434 (+) True LOC120547668
XM_039783510.1 mRNA downstream 674063 33157729 ~ 33199862 (+) True slc2a15a
XM_039783106.1 mRNA downstream 767122 33250788 ~ 33258175 (+) False fgf8a
TU268683 other upstream 1210364 31234364 ~ 31234723 (+) True G197999
XR_005637093.1 other upstream 2243267 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other upstream 2243306 30153511 ~ 30201781 (+) False LOC120547658
TU268204 other upstream 2826071 29536519 ~ 29619016 (+) True LOC120547718
TU268894 other downstream 309622 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 478722 32962388 ~ 32965074 (+) True G198245
unassigned_transcript_1124 other downstream 1218620 33702286 ~ 33702357 (+) True trnaw-cca_27
XR_005637201.1 other downstream 2390784 34874450 ~ 34874577 (+) True LOC120548589
TU269549 other downstream 2460606 34944272 ~ 34948428 (+) False LOC120548523

Expression Profile