RNA id: XM_039783871.1


Basic Information

Item Value
RNA id XM_039783871.1
length 1527
RNA type mRNA
GC content 0.46
exon number 5
gene id mgme1
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 22131121 ~ 22133520 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCATTACGCAACGGACAGATGAGGCGTAATAAGCGTAACAAGTGAAAGAAAGTAACTAAAATTAGTACCTCCGGCTCAATAACCACACGGATGTATTTCAATGATACACTGCACATTATGGGTAATGTAGTTTCTACCGGTACAAATGCAGTCATACCCGGAACTACACTTCCTAGTTACGGAAGTAATAGAGAAACAGTTGTGTTCGTTTGGACAACGAGTTACTTTCTTTGGGACATGTTGGGGCAAGTACCGTCACCCAAATGAAGGCAAACATCTTCGTTGTAATGTTGCTGTTAAAACACTGAAACAACTGTACGTAGGCCGTTGTTTAGCGAATAAGTCATTGCCTTCTACGAGCTTGTTGTGTGAAAGTGGTCACAATGTACATTCTTAAACGCGTGGTGTGCGCTGGAGGCACCATTGTCCATCAATGCACCTCCCTCACTGTGAGGAATTTCTCTGCTTGCTATTGCCTAACATCCCCAAAGAGACACAGCCCGTACAGCTCAGTGGACTGTGAGCGCTACTCTTCCCTtgtaaagtctgtaatgtcATCCAGGGTCAGTTCCCAAACCCCTGAGACCCTGCTAACGGAGGATGAGCACATCTATGGACCTGTTGTCAAAGCTCAAACGCCTTCCTCAAGACCAGAAATGAGTGAACCCAAAACCCTTCATCCATTCGTACGCTGCGAAGAGAGTATAGAAACAGAGGAGCCAGAGACAGGACCTCCAGCCCGGATTTTGTTAAACCGGGGCCAGGGCAGATCATTCGTACCGAGTGTGACGCGCATTCTTCAGCAGACGCTTTCCCAAGAGCAGATCTTCTACCTGGAGAGGTGGAAGAGGAAGATGATCGCAGAGCTTGGAGAGGAAGGCTTTAAAGAATACAGTCAGAATTTATTTAGGCAAGGGAAGCTTTTCCATTCAGCTTTGGAGGACATCCTGACGTCAGGTGCAACATGGAAGAACAAAGAGTATCCACCTGAGGTACAGGGATACATGGAGAGCATCTCTCACGTACTGGAGGACGTCAGTGCAGTGAGAGCTACTGAAAGCACTGTGCAACACGACACACTGAACTATCTGGGAATTGTGGATTGTGTTGCTCGCTACAGGGGTGTACTATGTGTTATTGACTGGAAGACTTCAGAGAAGCCCAAACCATTCCTGAGCAACACATATGACAATCCTATTCAGGTGGCAGCCTACGCCGGGGCTTTGAACAAAGATGGAAACTACAAATACCAGGTTGAAAATGGACTCATTGTAGTAGCCTACAAGGACGGCTCACCTGCCCATGCTCATCAGTTGAGCTCAGAGCTGATGTTGGAGTACTGGAAAACTTGGTTGGTTCGACTTGAAAAGTTCACAGAACAAAGATCCAGTCCTGCATCAAGTGTTTTTGTGGAAAAGAGATGAGATGTGTGAAGAGAGGTCTTTAAGGCCATGtccatgaagcaggtcatttcaGTTTAAGGCAACTGAAGCTAAACTGAAAATATAGCATGCTCCCATGCAGT

Function

GO: NA

KEGG:

id description
K19465 MGME1, DDK1; mitochondrial genome maintenance exonuclease 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265814 lncRNA upstream 4833 22125550 ~ 22126288 (+) True G195771
TU265797 lncRNA upstream 47381 22081129 ~ 22083740 (+) True G195757
TU265785 lncRNA upstream 74328 22052531 ~ 22056793 (+) True G195749
TU265743 lncRNA upstream 81309 21965685 ~ 22049812 (+) False G195711
TU265742 lncRNA upstream 159711 21965685 ~ 21971410 (+) True G195711
TU265827 lncRNA downstream 8705 22142225 ~ 22144422 (+) False G195783
TU265830 lncRNA downstream 8705 22142225 ~ 22144422 (+) True G195783
TU265978 lncRNA downstream 12783 22146303 ~ 22146792 (+) True G195881
TU265981 lncRNA downstream 21882 22155402 ~ 22155895 (+) False kif16bb
TU266002 lncRNA downstream 77622 22211142 ~ 22249845 (+) False LOC120547767
XM_039783749.1 mRNA upstream 29254 22099306 ~ 22101867 (+) True cfl1l
XM_039783032.1 mRNA upstream 36898 22088107 ~ 22094223 (+) False LOC120547561
XM_039783031.1 mRNA upstream 36898 22088108 ~ 22094223 (+) True LOC120547561
XM_039783082.1 mRNA upstream 58205 22070881 ~ 22072916 (+) False mrpl14
XM_039784015.1 mRNA downstream 16428 22149948 ~ 22153326 (+) True ephx5
XM_039784014.1 mRNA downstream 22338 22155858 ~ 22184492 (+) True kif16bb
XM_039783423.1 mRNA downstream 419486 22553006 ~ 22563704 (+) True flrt3
XM_039783857.1 mRNA downstream 514394 22647914 ~ 22692604 (+) True tasp1
XM_039783859.1 mRNA downstream 514394 22647914 ~ 22677722 (+) False tasp1
TU265655 other upstream 615993 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 799834 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 1377312 20752773 ~ 20753809 (+) True G195518
TU265393 other upstream 1600806 20529767 ~ 20530315 (+) True G195448
unassigned_transcript_1121 other upstream 1752838 20378212 ~ 20378283 (+) True trnaw-cca_26
XR_005637123.1 other downstream 514394 22647914 ~ 22669467 (+) False tasp1
XR_005637111.1 other downstream 1428763 23562283 ~ 23605574 (+) False disc1
XR_005637109.1 other downstream 2224406 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 2431030 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 2874992 25008512 ~ 25010761 (+) False dact2

Expression Profile