RNA id: XM_039784000.1


Basic Information

Item Value
RNA id XM_039784000.1
length 3080
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC120548053
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25817251 ~ 25826429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGCCCCTTAGTTTTATCTCTGACTTCAGCAAAGATGAGTCACGGAGACCGTTACACCTCGTCGTCCTACCGGAAGATTTTCGGGGATTCTCCCAAGTTCCCCGTGTCCTCCTCTCGCATGGGCAGCGCCTCTCACCGGGGCTCCCCGGGGCTCAGGTCCATGGCTGGCTCCCGCAACAGCGGGTCCTCCCTGAGCCTGTACAGACGGATCGGTCGCTCCACCTCTTATTCTCCGGTACCCAGCGACTCCCTAGACTTGACCCAGACCTCCGTGGTCAACAATGAATTCAAAGTTATTCGAACTAACGAGAAGGAGCAGCTGCAGGGTCTGAATGACCGCTTCGCCGTGTTCATTGATAAAGTGCGCCACTTGGAGCAGCAGAATAAGGTGTTGGAGATGGAGCTGGTGTCACTGCGGCAGAAGCAGGGCGAGCCGTCCCGTGTGGCTCATCTCTACCAGCAGGAGCTGATAGAACTGCGCTCGCAGGTGGATGAGCTGAGCCGGGACAAAAACCGCATCCTGATCGAGAGGAACAACATGGAGGACGAGCTGCAGAAGCTCAGTGTGAAGTATGATGAGGAGATGAGGGTACGGGAGGAAGCTGAGCAGACCTTGAGGTCCTTCCGGAAGGATGTGGATGACGCCACAGCCGTTCGCCTGGACCTGGAGCGCCGTGTGGAGTCACTGATGGATGAAATCTCCTTCCTGAGGAAAGTACACGATGAGGAAATCCACGAGCTGAGCAGCATGATGGAGGAGCAGCATGTCTCCGTGGAGCTCGAACCCGCCAAACCGGACCTCACCTCGGCTCTGAAGGAGATCCGCAACCAGTACGAGTCCATCGCCTCCAAAAACCTGCAGTCTGCCGAGGAGTGGTACAAGAGCAAGTTTGCCAGCCTCAGCGAGCAGGCCGCCAGGACCAACGAGGCCATGCGGGCTAGCAGGGAGGAGATCAGTGAGTTCAGGAGGCAGCTGCAGTCCAAGACGATTGAGATAGAGTCCCTGAGGAGCGCCAACGAGTCTTTGGAGAGGCAGATCACAGAGATGGAGGACGCACACAACGCTGAAGTCACAGCCATGCAGGACACTATTGGCCATCTGGATACTGAGCTGAGGAACATGAAGGGTGAGATGGCCCAGCACCTGAGAGAGTATCAAGACCTGCTCAATGTCAAGATGGCCCTGGATATAGAGATAGCTGCCTACAGGAAACTGCTGGAGGGGGAGGAGACTCACTTTAACTCAGGGATATCCTTTGGTGCTGCCAGCTACAGCTACCAGCCTCGAGCGTCAGCGTCCAGGAGCAgccagagggagaaagagggggccACCAAGGAAAGCTTCAAGGAGAGCAGTGAGGATAAAGATGAGGCAGACATCAACTCCAACAACTGAAGGAAGACAGGCAGGGAAATCTGGAAAGTGGGAAAAGAGATACGCCgtatatgtatagtatagtGAGTTCATAGTCACATACCGTATTTGTTAAGTGCAACGCTAAGACGTTGTGGAATTAGAGCTGGGTGATTAGCAACATCTTGTAGCTGAAACGTTCTTCTAATAAATACAACATTGGATGTTTTTCCTGGGACATTGGTCTcagcataggcgccgatttatgttttcctccgtgggtgctcacaggcgcacgccctttaaaaaaataaaataaataagtagtCAAAagatgtttgcatttcagaaccttaggaaatggacagtagccgacacaaacacacacacgcctattgACTCGAAAATAAAGCCATAAAGTAGGCTATATTTCAACTCAGGACatcgccacttctcacaaatacagataggattggagatgagaagtttaactgacacataaccgcgatcagctttgtgggaaattaagaatcaatgccacctgTCTAGTAGCCTAGGCCTAAACATGAATTAGTAGACCTGGGCCTGGCTATCGAAACGAACTGGATTAACAGAGATTCATTCTACCAGACCTTAAAAAACTCTGCATCTTTCTAAACAGTTGCATAACTAAAGAAGGTGTAAAACaagggtaaatattggagatgcattGTGCGCTAAGTGGGGGGATGGAGGGGGGGTCACTAAAAGAGGTCACAGagatcacactatgacagacgctccacttagcaccaactgcaatgtttaattttaaatgaagtctggcACAcatgggtgctcagtattttccatGGGTActcgagctccggagcacccacggtatcagCGCCTATGGGTCTCAGCATTTAGATGATCTTTGGACTCCTCTAAGCtttgtttcatttatttcacaCGTCATTATTGtataattaaaatacaatttcagaaGGTACAATGATCATATGTAGGCCACGTGAAATGGGGATCCCCAAACAAGCAACTAAAAGCTTTTTGGAGGGGGCCCAAGCAAACATTCAACACTTCCTACCAAAGGAAAATGACCTGAAAATCTGTACTGTACGTCCCTATAGGAAATAAACATGTtgcatatataaataataaaaaatatgtgaCCAGGTATTGAATGTTCTGGGGATGGATTCTCATTTTGCTGCTGATGAGATTGCACTGAAACCTGTCTGGATTGCTCAGATTGAGTCTTCATTTCTTAAAAGAAAGACACCAAATGTTTGTGTAGTTCCACTTCTGTTGTTGCAGCATCCTTTCAATGAACTTGTGCTATGAAGTTAGTCAAGACTATATCAGCTGTTAAATTTGATGTCCTTAACGTTTTCTAAGTTTTAGTTTTAACGTGAGAGAGGTAAGGTTCAAAGTGTATAGCAACAGTCACTCTATACGTATTAAAGCACTTTAGGGTGTATGGAGGACAGCAGTGTTTTGCATTGTTTGGTTGTATGGTATGACATTACAACGGTTGGTTCACATGGTTTATTACGATGTACATAATGCATTAGCTGTGAAAAACATTCAGAAAATGCAGTCCAACTGGTAGTACATATCATCTCACCTGGCTGCAGTGTCAATGTATACAACTAGTGGAAAACCACTCACTGTTGGTTTagttgcactgaataacgcaatgaataaaatgacaaattgaCTGAC

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07608 NF66, INA; internexin neuronal intermediate filament protein, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267222 lncRNA upstream 4810 25812215 ~ 25812441 (+) True G196788
TU267208 lncRNA upstream 22843 25779526 ~ 25794408 (+) True G196782
TU267118 lncRNA upstream 142347 25594496 ~ 25674904 (+) False zgc:110045
XR_005637158.1 lncRNA upstream 232674 25501529 ~ 25584577 (+) True LOC120548233
TU267083 lncRNA upstream 317971 25497004 ~ 25499280 (+) False G196696
TU267300 lncRNA downstream 78291 25904720 ~ 25907869 (+) True G196841
TU267292 lncRNA downstream 85332 25911761 ~ 25939959 (+) True G196836
TU267365 lncRNA downstream 164039 25990468 ~ 25992621 (+) True G196898
XR_005637095.1 lncRNA downstream 197491 26023920 ~ 26069456 (+) True LOC120547661
TU267388 lncRNA downstream 274063 26100492 ~ 26101022 (+) True G196921
XM_039784346.1 mRNA upstream 39208 25769647 ~ 25778043 (+) True ttl
XM_039784565.1 mRNA upstream 58933 25740192 ~ 25758318 (+) False ikzf1
XM_039783523.1 mRNA downstream 34402 25860831 ~ 25888074 (+) True xpo1b
XM_039783524.1 mRNA downstream 36370 25862799 ~ 25887388 (+) False xpo1b
XM_039783525.1 mRNA downstream 36866 25863295 ~ 25888074 (+) False xpo1b
XM_039783526.1 mRNA downstream 38620 25865049 ~ 25888074 (+) False xpo1b
XM_039784661.1 mRNA downstream 135926 25962355 ~ 25969516 (+) True haao
TU267128 other upstream 196576 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 806490 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1248084 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 1449652 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 2211677 23562283 ~ 23605574 (+) False disc1
unassigned_transcript_1122 other downstream 156316 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 836730 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 899330 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 1099989 26926418 ~ 27109140 (+) False LOC120547882
XR_005637159.1 other downstream 3286259 29112688 ~ 29177494 (+) True LOC120548242

Expression Profile