RNA id: XM_039784018.1


Basic Information

Item Value
RNA id XM_039784018.1
length 3618
RNA type mRNA
GC content 0.54
exon number 25
gene id jag1b
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 22894831 ~ 22920312 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCCAGGCcagcagtcagtcagtcagtcagtcagtcagcagTGGGCTCGGCTGCCGCATGGCCACTGTGTAAACTTTCTTCAACAATAAGGGGAAACTGTCGGATAACGAAGAAGAGCAGACGCTCGGAGAGTTTGAGGAACATAATAGGAAGAGGTCTTCTATGAATCGGGAACCTGTGCTCCGCTGATCAAAGTGTTGTTTCCCACTCGTGCATGTTTTAACCAGAGGAGAGCTCTGGTGCCGTGTGTCGGCCAGACGACGACTAACAAACGAGTGGCAACAGCAGTCCGGAGGCATGATTTTGAGACGGGGCTCAGTCGTTGTTGCCTTTTTACTCTGCTTTCTGGCGAAGGTGTCGGAGGGAACGGGACAATTCGAGTTGCAAATCTTATCGATGCACAATGTTAACGGAGAGTTGCTGAACGGCATGTGTTGTGATGGCACACGGAACACGGCGGATAGAAAATGCACACGGGACGAGTGCGATACGTTTTTCAGAGTTTGCCTGAAGGAATACCAGTCGAGAGTTTCTGCTGCAGGGCCCTGCAGCTTCGGATTGGGAGCTACGACTGTCCTCGGAGGGAATACCTTTTCTTTCAAGAGCTCTGTCAGGAATGACAAATCCAGGATAGTATTGCCCTTCAGTTTTGCCTGGCCGAGGTCCTACACTTTGATAGTGGAAGCCATGGACTGGAGCAATGAAACCAGTGATTGGAAGTTGATAGAGAAAGCCTCTCATTCGGGCATGATCAACCCCAGCCCACATTGGCAGAAGCTGACTCACAACGGCCCCGTAGCCCAGTTTGAGTACCAGATCCGGGTCAGCTGTGATGAGCACTACTACGGCTTTGGCTGCAACAAGTTTTGTCGGCCCAGGGATGAGTTCTTCGGGCATTACACATGCGACTACAATGGAAACAAGACCTGTTTGGAAGGCTGGTCCGGACCTGACTGCAACACAGCAATATGTCGACAAGGCTGCAGCACTGAACATGGATCATGTAAGGAGCCAGGTGGATGCAAGTGTCTGTATGGCTGGCAGGGCCAGTACTGTGACAAGTGCATCCCCCACCCTGGCTGTGTACATGGCACCTGTGGAGAGCCCTGGCAGTGCCTGTGCGACACCAACTGGGGCGGCCACCTTTGCGATAAAGACCTGAACTACTGTGGTACTCACCAGCCATGCCTTAATGGAGGGACATGTATCAACACAGGGCCTGACAAGTACCAGTGTACCTGCGCTGAGGGCTACTCTGGTGCCAACTGTGAGAGAGCGGAACATGCCTGTCTGTCCAATCCATGCTCTAATGGAGGGAGCTGTTCAGAAACCAGTCAAGGCTACGAATGTCAGTGTGCGCCAGGCTGGAGCGGCCCCTCCTGCACTATCAATGTTGACGACTGCGCTCCAAACCCCTGCAATCACGGTGGAACCTGCCAGGATATGGTCAACGGTTTCAAGTGTCACTGTCCTTCACAGTGGACGGGGAAGACATGTCTGATAGaTGCCAACGAATGCGAGAGCAAGCCTTGTGTCAATGCCAACTCATGCCGCAACCTGATTGGTGGATACTTCTGCGAGTGCATCCCTGGTTGGATGGGGCAGAACTGCGACATTAATATAAACGACTGCAAGGACCAGTGCCAGAATGGGGGAACTTGCAAGgaCTTGGTAAATGGCTATCGTTGCGTGTGTCCCCCTGGCTTTGCCGGCGAGCACTGTGAGAGAGACCTCGACGAGTGTGCGAGCGCACCGTGCCTGAACGGCGGCCGCTGTCAGGACGAAGTTAATGGCTTCCAGTGCCTGTGTCTGGCTGGTTTTTCAGGAAATCTCTGCCAGCTGGATATCGATTACTGCTCCCCCAACCCGTGTCAGAATGGAGCGCCTTGCTTCAACCTGGCCACAGACTACTACTGCGCTTGCTCAGAGGACTACGAGGGCAAAAACTGCTCTCACCTCAAAGACCACTGTCGCACCACCATGTGTAAAGTGATTGACAGCTGCACAGTTTCCGTGGCGTCCAACAGCACGCCGGGAGGGGAGCGCTACATTTCGTCAAATGTGTGTGGACCTCACGGCCGCTGCCGGAGCCAGGCCGGGGGCCAGTTCAGCTGCGAGTGCCAGGAGGGCTTCAGAGGCACCTACTGCCACGAGAATATCAACGACTGCGAGAGTAACCCATGCCGCAACGGAGGCACCTGCATCGACAAAGTCAGCGTGTACCAGTGCATCTGCGGCGACGGTTGGGAGGGCGACCACTGCGAGATCAACATCGATGACTGCAGCACCAACCCCTGTCATAATGGAGGGACATGTCGAGACCTGGTGACTGATTTCTTCTGTGAATGCAAGAATGGCTGGAAGGGAAAAACGTGCCACTCCCGGGAAAGTCAATGCGATGAAGCCACATGTAACAACGGAGGCACCTGCCACGACGAGGGCGACACGTTCCAATGCAAGTGTTCCCCAGGGTGGGAGGGTACGACGTGTAACATAGccAAAAACTCAAGTTGTCTTCCAAACCCGTGTGAGAATGGAGGTACCTGCGTGGTGACTGGGGAGTCGTTTACCTGCGTCTGCAAGGAAGGCTGGGAGGGTCCCACGTGCACCCAGAatACCAACGACTGCAGTCCCCACCCATGCTACAACAGCGGAACCTGCGTTGACGGGGATAACTGGTACCGCTGCGAGTGCGCCCCAGGCTTCGCTGGTCCAGACTGTCGGATCAatATTAATGAGTGCCAGTCCTCTCCATGTGCCTTTGGATCCATCTGTGTGGATGAGATCAACGGATATCGTTGCGTGTGTCCACCAGACAGGACTGGACCCCACTGTCAAGAAGTGACAAGAAGACCTTGCTCGGTCAATGGACACGTCACCCCTGATGGACTCAAATGGGATGAAGACTGCAACACTTGCCACTGTTCTAATGGGAAAGTTGTGTGCACAAAGATGTGGTGTGGCCCTACATCATGCCACCTGGGTGCCAAAGGTCGAGGCGGGTGTCCCTCAGGCCAGAGCTGCATCCCCATCAGGGAGGGCCACTGCTTTGTGAAGCCCTGCCTCGGGCTCGGAGAGTGCTGGCGCTCCAACCCTCCCCCGCGTCCCACCAAATGCCACCCCAGCTCCAGTTACCAGGACAACAGCTGCGCCAACATCACCTTCACCTTCAACAAGGAGACCATGCCTCCAAGCTTGACTGTGGAGGATGTGTGTAAGCAGCTGAGGCGCTTGTACGTAGTGAAGAATTTCTCCTTGGAGCATTCTGTGTCCATAACCTGTGACCCCTCATTCTCAGCCAGCAACGAAATCCACGTCTGCATCTCCACGGAGGACCATCGTTTGGACCGGAGCCCCATTAAAGAGATCACAGACCGGATAATCGACCTGGTTAGCAAACGCAACGGGAACAACACCATAATCACCGCCATCGCAGAAGTGCGCGTGCCAAGCCCCAGCAAAACTGGTATGAACCGCCTCCAAACTCTTGTTGTTGCCTGTGCTTTTTCCCAGACTTGCACACACAGTGGGTGGGAGGATttggcattttttatttttttttaagaagatCAGATTAGATCGAGCCAAGCCCTGAATATGACAGCAACGCCAAGCAC

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005112 Notch binding molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06052 JAG1, CD339; jagged-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637110.1 lncRNA upstream 128178 22723027 ~ 22766653 (+) True LOC120547852
TU266046 lncRNA upstream 185258 22708936 ~ 22709573 (+) True G195941
TU266021 lncRNA upstream 217105 22676079 ~ 22677726 (+) False tasp1
TU266018 lncRNA upstream 253907 22635738 ~ 22640924 (+) True G195915
TU266002 lncRNA upstream 644986 22211142 ~ 22249845 (+) False LOC120547767
TU266075 lncRNA downstream 863 22921175 ~ 22921899 (+) True G195964
TU266079 lncRNA downstream 2464 22922776 ~ 22924662 (+) True G195968
TU266084 lncRNA downstream 43655 22963967 ~ 22964130 (+) True G195973
TU266141 lncRNA downstream 69372 22989684 ~ 22989890 (+) True G196016
TU266142 lncRNA downstream 70121 22990433 ~ 22990702 (+) True G196017
XM_039783857.1 mRNA upstream 202227 22647914 ~ 22692604 (+) True tasp1
XM_039783859.1 mRNA upstream 217109 22647914 ~ 22677722 (+) False tasp1
XM_039783858.1 mRNA upstream 218790 22647914 ~ 22676041 (+) False tasp1
XM_039783423.1 mRNA upstream 331127 22553006 ~ 22563704 (+) True flrt3
XM_039784014.1 mRNA upstream 710339 22155858 ~ 22184492 (+) True kif16bb
XM_039783482.1 mRNA downstream 38997 22959309 ~ 22963954 (+) True mkks
XM_039784616.1 mRNA downstream 57840 22978152 ~ 22982603 (+) True spast
XM_039784617.1 mRNA downstream 57840 22978152 ~ 22982603 (+) False spast
XM_039783038.1 mRNA downstream 81692 23002004 ~ 23009219 (+) True LOC120547567
XM_039783367.1 mRNA downstream 91077 23011389 ~ 23030751 (+) False vit
XR_005637123.1 other upstream 225364 22647914 ~ 22669467 (+) False tasp1
TU265655 other upstream 1379703 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 1563544 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 2141022 20752773 ~ 20753809 (+) True G195518
TU265393 other upstream 2364516 20529767 ~ 20530315 (+) True G195448
XR_005637111.1 other downstream 641971 23562283 ~ 23605574 (+) False disc1
XR_005637109.1 other downstream 1437614 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 1644238 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 2088200 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 2693095 25613407 ~ 25620675 (+) True prdx3

Expression Profile