RNA id: XM_039784103.1


Basic Information

Item Value
RNA id XM_039784103.1
length 3271
RNA type mRNA
GC content 0.44
exon number 9
gene id sirt1
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25131453 ~ 25138549 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCTATGCAAATGAGACAGCTGTCCGAGAGGAAGGATCTGCTCAACGGCTCTGCGGGCTGAAAATGGCGGACGATGAGACTAGTCTCGGAACGGCCTTTTCAGCCGTCTCCGATATGGAAGAACCTGCCGCGAAAAGGTCCAAAATGTGCTCGTTAACTAACCACGGATTCAAAGTCgctaaaacagaaacattaTCATGCGTCTCTGGGGCTACAGAGAGCTGGGAGCCGGGGGTGAATTGTGCGCAGCCAGCGGAGAAGGAAGCAAAGCCGGTGATGGCGGTAGAGCAGGCCCCAACAACAGCGCTGGGAGGAGACAACAATGGACTGGGACTGCTGGTCTCCGAGCCGCACAAACCAGTAGTTAAACTAGACGACAGCGCTATGCTAGGGACAACTGAGGAGAGTGCTGATTTCCTTGGACATGACGATCTTCCCTCCTACGGCCTGGCTGTCACGCCGGACCACATCAACGAGGAGGACGATGACAGATCCTCACATGCAAGCTCCAGTGACTGGACACCTCAACCGCAAATAGGTTCCTACAGTTTCATCCAGCAACACATCAGAGAGACCGATCCGAGGACCATTCTGAGGGATTTGCTGCCTGAGACTGTACTCCCACCAGATTTAGACGACATGACATTGTGGCAGATTATCATCAACATCTCAGAACCTCCAAAAAGAAAGAAGCGGAAAGATATTAACACCTTAGAAGATGTGGTCAGGCTACTCCATGAAAGTAAAAGGATCCTTGTGCTGACTGGTGCTGGGgtGTCAGTTTCATGTGGAATACCAGACTTTCGCTCCAGAGATGGAATTTATGCACGGCTCGCTGTAGATTTTCCTGATCTTCCAGACCCTCAAGCTATGTTTGACATTGAATACTTCAGACAGGACCCAAGACCCTTTTTTAAGTTTGCTAAGGAGATCTACCCTGGTCAGTTCCAGCCGTCACCCTGTCACAAATTCATATCCATGATGGATAAGCAGGGGAAACTGCTGCGCAATTACACCCAAAACATTGATACATTAGAACAAGTGGCTGGAGTTCAGCGGATTATCCAGTGTCATGGGTCGTTTGCAACTGCTTCCTGTCTCGTCTGTAAACACAAAGTGGATTGTGAAGCTATAAGGGAAGACATCTTTAACCAGGTTGTCCCTCATTGTCCACGGTGTCCAGATATTCCTCTGGCAATCATGAAACCTGACATCGTCTTCTTTGGAGAGAATCTTCCAGAAATGTTCCACAGAGCCATGAAGCAGGATAAAGATGAGGTGGACCTCTTGATTGTCATTGGCTCTTCACTTAAAGTCCGACCAGTTGCCCTCATCCCAAACTCCATTCCTCATGGAGTGCCTCAGGTCTTGATCAATAGGGAGCAGCTGCCTCACCTCAACTTTGACGTGGAGCTACTTGGGGACTGTGATGTCATTGTCAATGAACTCTGCCATCGGTTGGGTGGGGATTTTGAGCAGCTCTGCTACAACACTGTAAGACTCACAGAGACCACGGAGAAACCCCCTCGGTTACCAGAACAGCCACCAGGTGAGGCCTTGCCTGCTTCCAGCGATGCAGCTCAGGAGGAGCAGAAGCAGCACAGTACAGACTCCGTAACTAAGCCTTCAGAGGAGACGGAAAGTCCGAATGTCACAGAAACTGCCGGTAATAATGTTACACCTCCAGAGCCTTGTCCAAATGCTCAGTGTCCCAGTGAAGAGACGGCTGAGCCCTCAGAGTTACCAGCAGAAGACGCACCAAAAGAGGAGGCCGCTGGAGTAAAGAGCCAGACCTCCAACCTTGAATTTCGTAGACGATGCTGGATGAGTCGAATCAACAGAAGTCCAATCAGCAAACGCCTTGAGACAGGCCAGTACCTGTTTCAAGCACCAAATCACTATATCTTCCATGGGGCTGAGGTCTACTCTGACTCTGAAGACGAGACGTCGAGCTCCTGTGGAAGTGACAGTGACGAGTCTGAATGCAGCGGAGATGGGGTGGAGGAAGACAGCGAGCCAGAGGAAGCCGACACATTAGCAGCAGATGAAGAGACATGCCTAAGAGACACAATACAACACACTTTAGCCAATGAGGCCACATCGAGTGTGCAGACAGACATTACTTCTGAAAAAACTCAGAGCACCACACACCTTTAAATGTAAAGTACCCAGTCGACAAAGCActaattatctttttttattattattatatatatatatatgtttcgTATATTTTTGACTCCTCAACCGTACTATTATTTTTCATAAAGTTGAAATTGCGTGACAACTTTTTGTGAATATGCAGCaagttttttgttgtgtgtgcccAGTTTGATCACATGCATTGGGTCTGAAACCTCATACTGTATACCACACGCTAAAGAAtgcagtatttgtttttttgatttttttcaggATTTCCTTCGATGTGCTCATCTCATTTTTATTCACATCCAGATACAAGCAAACACTTCAAATTTCTCATCCCCCAGTGTGAAGTCAGCTGTGGTCTAATGATTTTTTTAAGTCACTTCATGTTACCATTTGGAAACATGTACATATGTAAGACTGCCTGCTAAATAGTGGGTACTATGAGTTTCAGACGTACAGAAATCTTCAGATGGTTTACTTGAACACATTGTCTAACTTGCAATATAAACGTTCAGCTCTGCCCTTTAATGAGGGTAAAAGCTAGAAAAAAAGATCAGTACTCTTTAATTTCAGACCAAAGAACACTTTATCAACACGCTCCTATGTTGTCATAAGCTTTGTATGTTTAACCTGTCATTTAAATCTTGGAAAAATATAATTGAAAAGGTGTTCCTTCTGACATGTGGCAGCTACTTTATATGCTCAAGCCTTATTTTTATACTCCGATGTGAGACATACTCATCAAAGAGTAGATGATAGTTTATATCTGTACAAAGTTATACTAAGTTGTAATATTAAGCCTAAGGAAGATATTCAGAGTTCACATTGAAAAATGGCACTCTTTTCCCTTCTTATAAAAGCGATTTTCTTGCCCATGTCACTTTTCATAGAACATAACGTTAAAACAGTTTCATTGATTATACAGGAGTCTTCTGCCTGTTAAGATTATGTTTTGGTAAATAGACATATTTGAGCCAATTTGTAGGATAAAGGTCTACGCCAACACGTTCACATACCAATTACAAGGTAATGTTTTGTTTACGGTTTAAggaataagattttttttacatcctTGTTATCTCTTCTGGGGttctcagtaaaaaaaaagaatgaaacaca

Function

GO:

id name namespace
GO:0002042 cell migration involved in sprouting angiogenesis biological_process
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11411 SIRT1, SIR2L1; NAD+-dependent protein deacetylase sirtuin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637083.1 lncRNA upstream 12330 25117090 ~ 25119124 (+) False LOC120547601
TU266849 lncRNA upstream 12332 25117078 ~ 25119122 (+) False LOC120547601
TU266852 lncRNA upstream 14087 25111395 ~ 25117367 (+) False LOC120547601
TU266891 lncRNA downstream 4616 25143165 ~ 25144232 (+) False cacul1
TU266903 lncRNA downstream 39610 25178159 ~ 25181813 (+) True G196558
TU266908 lncRNA downstream 50881 25189430 ~ 25189679 (+) True G196563
TU266954 lncRNA downstream 80998 25219547 ~ 25219914 (+) True G196595
TU267020 lncRNA downstream 179717 25318266 ~ 25320869 (+) True G196648
XM_039783534.1 mRNA upstream 23374 25091886 ~ 25108080 (+) True herc4
XM_039783532.1 mRNA upstream 42384 25085914 ~ 25089070 (+) True LOC120547833
XM_039784171.1 mRNA upstream 46684 25075214 ~ 25084770 (+) True fam83ha
XM_039783641.1 mRNA upstream 76507 25033481 ~ 25054947 (+) False lrrfip2
XM_039784767.1 mRNA downstream 498 25139047 ~ 25144254 (+) True cacul1
XM_039784272.1 mRNA downstream 6008 25144557 ~ 25164629 (+) True mypn
XM_039784234.1 mRNA downstream 29376 25167925 ~ 25169050 (+) True atoh7
XM_039784114.1 mRNA downstream 32555 25171104 ~ 25177459 (+) True pkd2l1
XM_039784295.1 mRNA downstream 53270 25191819 ~ 25197871 (+) True bag3
TU266801 other upstream 120693 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 562287 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 763855 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1525880 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2461987 22647914 ~ 22669467 (+) False tasp1
TU267128 other downstream 474858 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 678702 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 844196 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1524610 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1587210 26725759 ~ 26735787 (+) False tmem254

Expression Profile