RNA id: XM_039784117.1


Basic Information

Item Value
RNA id XM_039784117.1
length 1516
RNA type mRNA
GC content 0.56
exon number 10
gene id LOC120548109
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 30711573 ~ 31005023 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAATTCCGATAGTCTTGAATGCAGCAGGGATGATGTTGCCTTGGATCCATATTACCTTGTTAGCAGGTTGCAAGCTAGCTGAATACAGACGGTACAGTGCGGATACAAGAggatgtcacacgttttttaaTACGAACTGAGGACTTCGTGGTTTTTATCGGCTCGACACAAGCAGGACTAATAACTCCCAAACTTTGGCGAGATGACGACGCGCTCAGAGCGAGAGAAAGCCCAGAAACTGAATGAGCAGCATCAGGCCATTCTGTCTAAACTGCTGAGGGAAGAACACAACAAGTTCTGTGCTGACTGTGAGGCAAAAGGTCCTCGATGGGCATCATGGAACCTCGGGGTGTTCATGTGTATCCGCTGTGCCGGCATCCACCGCAACCTGGGTGTCCACATCTCCAGAGTCAAATCTGTCAATCTGGACCAGTGGACACCCGAGCAGATCCAGAGTATGGTGGACATGGGCAACAGCAGGGCCAAACAGCTGTATGAAGCCTACCTACCAGAGAACTTCAGACGGCCACAGACAGACCAAGCAGTGGAGGTCTTTATCCGGGACAAGTACGAGAGAAAGAAGTACTGCAACAAGGAGGCCCTGACTGCAGCTCCAAAGGAGCGTGAAAAGAataaagaggagaagaagaaggatgtTAATAAAGtggagaaacacaacaacacaaagCAGTCCGAGTGTAGCGCCAGTCCCAAGGGAAGCACAGAGCCGGCTGTGGACCTGCTGGGCCTGGATGCTCCAGAGGGTGATGGGAGGGGCTCGAGTGGTGCAGCACCAATCAGCGATGAACTGGACATCTTTGGACCAATGGTCTCCAACCCTCTTCCCTCTTCCAACAACACACAGCAGTCTGGTTCCAGTCCAGCACCTCCACAGGCGGACCCCTCCAcctcgtcctcttcctcctcctctacctccACCACTACCACCACGAAGGCGGAGGAgaagaagcttttatctaaagACTCCATCCTGTCTCTGTACGCCAGCAGCTCAGTGGCCAGTCAGCCGCAGAGCCAGCAACAGCCTGCTCCAGGACAAGcAGGAATGTATGCGGGCCAGCCTCAGATGCCGTTCACTCCGCAGGGTTTCACTCCAGGGATGGGCGGAGCCGCCATGGGCGGAGGAGGGGCCATAATGCCCGGCATGGCGATGCCCAACGGCAGCTACATGGGCATACAGCAGCAGGGCGGGTTGCCAGCCAACCAGAACATTTACAGCATGCAGCCAGGACAGCAGCAAGGACAGTGGAACATGAGCCAGATAACCCAGCAGATGTCAGGCATGGATGTGAGTGGTGGAGTGCCGGCACCAGCCACTTTCAGCCAGGCAGGGGCCCCTGCGGCTGGCTGGCCCGCGGCTCCACCTGCAGCTACTGGCCAGACCCTCAGCACTCAGCTGTGGAAGTGAGGAAAAGGGGGTCCGGAGGAGGAGTGGGGGAAAACGGAGGGCAGTCATATGGCAATAAAATAGtgccccccccaaccccccccaac

Function

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268531 lncRNA upstream 37091 30674212 ~ 30674482 (+) True G197854
TU268586 lncRNA upstream 64253 30646403 ~ 30647320 (+) True G197909
TU268566 lncRNA upstream 223015 30488250 ~ 30488558 (+) True G197889
TU268564 lncRNA upstream 224160 30487115 ~ 30487413 (+) True G197887
TU268562 lncRNA upstream 228144 30483208 ~ 30483429 (+) True G197885
TU268665 lncRNA downstream 193932 31198955 ~ 31200000 (+) True G197982
TU268666 lncRNA downstream 195833 31200856 ~ 31202473 (+) True G197983
TU268674 lncRNA downstream 201068 31206091 ~ 31206356 (+) True G197991
TU268686 lncRNA downstream 235922 31240945 ~ 31242282 (+) True G198002
TU268688 lncRNA downstream 246366 31251389 ~ 31251871 (+) True G198004
XM_039784239.1 mRNA upstream 40389 30625630 ~ 30671184 (+) True slc1a4
XM_039784240.1 mRNA upstream 40389 30632467 ~ 30671184 (+) False slc1a4
XM_039783831.1 mRNA upstream 110964 30567675 ~ 30600609 (+) True sertad2b
XM_039784893.1 mRNA downstream 178297 31183320 ~ 31198691 (+) True ogfrl1
XM_039783784.1 mRNA downstream 337936 31342959 ~ 31493220 (+) False LOC120547952
XM_039783783.1 mRNA downstream 337937 31342960 ~ 31493220 (+) True LOC120547952
XM_039784235.1 mRNA downstream 507841 31512864 ~ 31573621 (+) True bcl11aa
XM_039784236.1 mRNA downstream 507841 31512864 ~ 31573621 (+) False bcl11aa
XR_005637093.1 other upstream 509753 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other upstream 509792 30153511 ~ 30201781 (+) False LOC120547658
TU268204 other upstream 1092557 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other upstream 1114748 29595292 ~ 29596825 (+) False LOC120547718
TU268132 other upstream 1361645 29348425 ~ 29349928 (+) True G197531
TU268683 other downstream 229341 31234364 ~ 31234723 (+) True G197999
TU268894 other downstream 1788265 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 1957365 32962388 ~ 32965074 (+) True G198245
unassigned_transcript_1124 other downstream 2697263 33702286 ~ 33702357 (+) True trnaw-cca_27
XR_005637201.1 other downstream 3869427 34874450 ~ 34874577 (+) True LOC120548589

Expression Profile