RNA id: XM_039784131.1


Basic Information

Item Value
RNA id XM_039784131.1
length 1215
RNA type mRNA
GC content 0.44
exon number 6
gene id calm2a
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26527783 ~ 26531726 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAAAGAGGAGGAGTTTAGGATAGCCGTTAAAGGCGAGTCCAGTTGCTTCTTCCTCAGTGTGTTCACAGAGATTGTCAGTTCGTTTAGGTTTGTTACGGATTTTGTCGTGAACTAGCCGCTGCATCTACATCGAAATGGCTGATCAGCTTACAGAAGAGCAGATTGCTGagtTCAAGGAGGCGTTTTCGCTCTTTGACAAGGATGGAGATGGCACCATCACCACCAAAGAGCTGGGAACTGTCATGCGCTCTCTGGGCCAGAACCCCACAGAGGCAGAGCTGCAGGACATGATCAATGAAGTGGATGCTGATGgaaatggAACGATAGACTTCCCAGAGTTTCTCACCATGATGGCCAGGAAGATGAAGGACACAGACAGtgaggaggagatcagagaaGCATTCCGTGTCTTTGACAAGGATGGTAATGGATACATCAGTGCTGCTGAGCTGCGCCATGTGATGACAAACCTTGGGGAGAAGCTGACTGATGAAGAAGTGGATGAGATGATTAGAGAAGCAGACATTGATGGAGATGGACAGGTCAACTATGAAGAGTTCGTACAAATGATGACGGCGAAGTGAAGGGCTTGTACAGATTTCGTATATAAataatttgccttttttttttctttctttgtgtaaTTTATCTGTAAAATCTTAATAGCCCCCTTCGTCCCTGCCCCATCTGCTGTCCAAAGGAACTGCATGTAAACTGCATAGGCTCTTGTCCCCAtgtcccttttttcttttgctgtcATGGTGTTTTGGAGTGACGGAATGGTCATACAACCAGATGCCTGTGGAGGCCCCTGGGAGCCGGAGTACTTCGAATCTTCCCGTCTTGCGTGCTCGGGGCCACTCCACGCATGGCGACATTGGAAACCTGTCAGCTGGTTGTCCCTTGGCAACACTGTTGGCATGGAAACAATGTAGAGGAGTTTAAACTCTGCATGGACTACGGACAAAGTATATATTGTAATCTCTCAGCATTGCACTACTGCAAAAAATGACACGGGTGTATCTCCTAGGTACTCGTACAAACTTTTTTTGTATCTGCTGTTCTAATACCAGAAAACGACTAATCTTACcatgctttttaatgttttactcacttttacttttttttttttttttttatgacttctgGTCATGCCTCAAATAATCCATTCCAagttgtatatttttgttttccaaTAAAAATTACAATCTAC

Function

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267441 lncRNA upstream 216497 26291118 ~ 26311286 (+) True G196967
XR_005637135.1 lncRNA upstream 398252 26122891 ~ 26129531 (+) True LOC120548056
TU267403 lncRNA upstream 410143 26117101 ~ 26117640 (+) True G196935
XR_005637134.1 lncRNA upstream 416608 26106533 ~ 26111175 (+) True LOC120548055
TU267388 lncRNA upstream 426761 26100492 ~ 26101022 (+) True G196921
TU267508 lncRNA downstream 1306 26533032 ~ 26533234 (+) True G197027
TU267510 lncRNA downstream 6755 26538481 ~ 26539273 (+) False stpg4
TU267513 lncRNA downstream 8118 26539844 ~ 26540135 (+) True G197029
TU267520 lncRNA downstream 92909 26624635 ~ 26627702 (+) True G197035
TU267521 lncRNA downstream 92909 26624635 ~ 26626781 (+) False G197035
XM_039783071.1 mRNA upstream 6206 26495508 ~ 26521577 (+) True si:ch73-105b23.6
XM_039784292.1 mRNA upstream 51056 26414524 ~ 26476727 (+) True plekhh2
XM_039783140.1 mRNA upstream 547346 25977457 ~ 25980437 (+) True hcar1-3
XM_039784661.1 mRNA upstream 558267 25962355 ~ 25969516 (+) True haao
XM_039783525.1 mRNA upstream 639709 25863295 ~ 25888074 (+) False xpo1b
XM_039783202.1 mRNA downstream 3558 26535284 ~ 26548760 (+) True stpg4
XM_039784276.1 mRNA downstream 87691 26619417 ~ 26622570 (+) True mcfd2
XM_039784275.1 mRNA downstream 87696 26619422 ~ 26622570 (+) False mcfd2
XM_039784776.1 mRNA downstream 193990 26725716 ~ 26735774 (+) True tmem254
XM_039783258.1 mRNA downstream 226607 26758333 ~ 26767338 (+) True LOC120547700
unassigned_transcript_1122 other upstream 544945 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 703106 25817251 ~ 25824677 (+) False LOC120548053
TU267128 other upstream 907108 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 1517022 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1958616 24564550 ~ 24569167 (+) True G196439
TU267544 other downstream 131433 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 194033 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 394692 26926418 ~ 27109140 (+) False LOC120547882
XR_005637159.1 other downstream 2580962 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 2581156 29112882 ~ 29114881 (+) False LOC120548242

Expression Profile