RNA id: XM_039784139.1


Basic Information

Item Value
RNA id XM_039784139.1
length 2220
RNA type mRNA
GC content 0.47
exon number 22
gene id blnk
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 28231795 ~ 28275999 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGCCTGGCCCTGGATGACCTTGCTAAAAACTGTTCCAAAACATGCCCCCATGAACTTGAATGCCTCATTCATGTGATGTAAGTTATTAGCAGCCGGTTGAAATGGCAACATTGTCTAGATGGAAGTGGAATTGAAGAGGGTCAGGAGAGATGTGATGCAAGAGGTTTGTTCACTGAAATCTGTGTAAGACGGGGAGTGGAAAAgagaagtgattttttttttccaccagaGGCGGATTAGAATGAATTTCCTCCCCTCTGTGACAAAGACGTGACCTGTAGCCAAACACTGTGTTCATTATCATTCCTGCGAACGATCTAGCAGCACACACTTAATGCATGACAGGACTCAGGTCCAAAAatgttaaacatgaatatgGAAACGTTAGGTAAACTCACTGCTCCTGCTACAGAAAAGATTCGGCAGCTTCAGAAGATTGTTCAAGACATCAAGAAAAATGACGGCAGCTTACTGAATAAACTGAGAAGGCTGAAAGGCAAACAACTTCCAAAAGTCCCTGCGAGAGATTACAGAGATGACAGGGAAGACGACGAACTGTCTGAACCTGATTATGATAATGACATGTACGAGGATCCACGTGAGGACCAGGACGACAGCTACGAGCCTCCTCCCAGCCACAGAGTCTTACCCACAACTCCCTCCGCTTCCTTCCCCAGGGGGGAGTATCTTGACAACTGCCGTAACCGGCCCGACCGGCCGCCCAAAAAGCCCCTCCGCCCAACCAGAGCCTCCAAACaactgccccccgaacccaccCACCAGGGAAGCGATGATGACAACTACGTTGATCCAGACTGCAGTAACGATGATGACAACTACGTAGAACCTGCAGGGAATCAGTCTTCCAATCCCATGATGCACGGTGGGAGCAGGGCAGGCAGGGAGCGTCCCATGTTGCCTACACCTTTACCAGAGTGTCCACCCAGTCCTGACTTTTATGAAGTTCCTGACCAAGAGGGAAGCTCATTATCTCTTCCAGCAAGCAGACTGTGTCCAATCCCCACAACACACTCATTTTCTTTACCGCCGAAGCCCAGCCCAAGAGTGAATATGAAGAGATCTCCTACAGCTGTCCAGGAGCCCACAGGCGACGATGAATATGAAGTTTGCAATCCATGTGATGGTTCCAGTGATAAACCTGCAGAGAGCCCTCCTCTACTCCTACCAAAACCTTTGCAGAGAGAGAGGTCACCAAAACCACCTTTAAAGCCGagGCCAGCTTTAAAACCCAGGAAATTTGAAAGCCAAACACTACCTGTGATGCAAAATGACCAGAAGCCTCCACCAAAAGCTTTTACACTGGACTTGAAACGACCAAAAATTCCTCTTCAACAGTTGCCCTCCCCCAAACCAGCTGACAGAGGAAGCGTCTCTGCTGAAAATGGACTAATAGACCAAGATAAGGACGTCTATAAGAAATCCTGGTATGCCAGCACATGTGACCGCAAGACTGCTGACGATGTCTTGTGTCGCTCAAATAAAGACGGGGCGTTTATGGTGAGGAAGAGCTCCGGTCAGGACGCACAGCAGCCATATACGTTAGTGGTGTTTTACAAGGGCAGAGTGTACAACATCCCCATCCGCTTCATACCAACCACTCAGCAGTACGCTCtgggaagagagaagaaaggggaGGAGTATTTCAGCAGCCTCTCCCACATCATCGACAGCCACCAGAAGTATCCTCTGATGCTGATTGACGGCCAGAGTAACACCAAGGAAGCCACCAAACTGTGCTACCCAGTGAGGCCCTAGAACACCCCCGCTGAGTGCAAACAGCCAAGGAACTAGACTCGTACATCCCAACCTGCTGTGTTAACTGTCAGACTGTTTACAGAACTCCTTTATATTATGTGAtgcttttctcctcctcctttagtgTTAATTCGAGGTCCTGTCAACAGGATTGTATGCTAGACTTGCCTGTATTGCTGGCCATGCAGAGCCAAAAATAGGACTGACTCAGATGTCTTTTTATAACTtgttttatttagatttttttttttttaatgctcagTCGGTAAACAGTGTATTTAAATGAATGCAAGGAATGACAGTGTTGCTGTGGCCGAAGGATGCAGGTAGACACATCATTTGTTTATGACAGCAAATACTTTGCGGGAGccacaaagaaagaaatacaaaaggttgtatgtttttgttttaataaaactcTTTTCTTGTCTTGTATAATTTA

Function

GO: NA

KEGG:

id description
K07371 BLNK; B-cell linker protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267805 lncRNA upstream 3568 28250758 ~ 28251552 (+) True G197270
TU267770 lncRNA upstream 248961 28004577 ~ 28006159 (+) True G197237
TU267715 lncRNA upstream 650295 27569913 ~ 27604825 (+) False LOC120548047
TU267703 lncRNA upstream 743533 27510648 ~ 27511587 (+) False LOC120548261
TU267683 lncRNA upstream 885189 27369236 ~ 27369931 (+) True G197158
TU267815 lncRNA downstream 24165 28300164 ~ 28302330 (+) False ccnj
XR_005637196.1 lncRNA downstream 133471 28409470 ~ 28411483 (+) True LOC120548567
TU267828 lncRNA downstream 173581 28449580 ~ 28452009 (+) False G197287
TU267829 lncRNA downstream 173581 28449580 ~ 28452009 (+) True G197287
TU267842 lncRNA downstream 189147 28465146 ~ 28474917 (+) True G197299
XM_039784781.1 mRNA upstream 354916 27891450 ~ 27900204 (+) True vent
XM_039784347.1 mRNA upstream 367511 27886243 ~ 27887609 (+) True vox
XM_039784780.1 mRNA upstream 376552 27808304 ~ 27878568 (+) True LOC120548504
XM_039783993.1 mRNA upstream 474079 27554928 ~ 27781041 (+) False LOC120548047
XM_039782996.1 mRNA downstream 18206 28294205 ~ 28302333 (+) True ccnj
XM_039783782.1 mRNA downstream 44748 28320747 ~ 28350987 (+) True btaf1
XM_039784912.1 mRNA downstream 136267 28412266 ~ 28447794 (+) True march5
XM_039784913.1 mRNA downstream 138347 28414346 ~ 28447794 (+) False march5
XM_039783043.1 mRNA downstream 211524 28487523 ~ 28508440 (+) True LOC120547570
XR_005637113.1 other upstream 1145980 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 1519333 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 1591335 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 2272282 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 2430443 25817251 ~ 25824677 (+) False LOC120548053
XR_005637159.1 other downstream 836689 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 836883 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 1072426 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 1260520 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 1319293 29595292 ~ 29596825 (+) False LOC120547718

Expression Profile