RNA id: XM_039784234.1


Basic Information

Item Value
RNA id XM_039784234.1
length 1126
RNA type mRNA
GC content 0.43
exon number 1
gene id atoh7
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25167925 ~ 25169050 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTAGGCTGTCCACTATCTGGAGTTACGAAatacagaggacacacacatcTTGGACATCAGCCAGGCTGTAACATTAAGGAGACCTCTGAGGAACCTTGAAGCTGAACTGGAAACTTCTCTAATAAATCTGTTGACTGGTACCTGAGTCTTTCTGACCTGAGGACATATACCGGTTTGATTCTTCGACCAAATATCATGAAGTCTCGGCGACCCAGCTGCACTGACTCTGGATCCGAGTCCTCAGAACCAGACTCCAAGAGCCCGGAGAAATATGAGACCGCCACGAGGCGCCGGATGGCTGCCAATgccagagagaggaagaggatgcAGGGCTTGAACACAGCCTTTGATCGCTTACGTAAAGTGGTCCCCCAGTGGGGCCAGGACAAAAAACTGTCCAAGTATGAAACCCTGCAGATGGCTCTCAGCTACATCATGGCCCTCAACCGGATCCTGACAGACGCCAGGAAACACAACTCTGCTCCTCACAGGCAGTGGCTGGACCTGCAGTTTGACTGTGTGCAGCCTGAAAACTACCCCTGCCTCATGAGGTACGACTCTCCCACTGAACAGGACTACATCCACTCGTCCTTCTCGTATCAGTTCGATGGCCATCAGGTCCACGGATAAACTGCTGCCAATTGGTAGATAATCAGTCATGTTGTTGGATGTGAGTGACAATGTGAATATTTCTCCTTCAATCCAGGAGACAGTAAATACATTTGTAttgcattattttatttttgcatttatttagtttttgtatGTATGACTAAAAGACTTCTATTTCACTTTGAAgtcgtttttatttttgctaGGAAACCCAGCAATGTTGagcattttttttgttcaaagtATAGTAGCAATGACAGAATTGTTGTTGTGTCATCATAATGACCACTAGATTGTAAGGAAGATACAGTGTATTTGTTTCTATCAGTTATTTTGATACGGCCCTAAAATGTTGTGCAATGTTCAATGGATTCTGAGAAAATCATTGTGGTCTTAGTTGCATAGTCAAAGTCAAATTATGTAACTATTTTGTCAAAGTGTAAGTACGTGTTTGTGGAGTTGGAAAATCAATGTTATTTTTCACATGCAGACCTCTATTTTGTTGAATTATAG

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09083 ATOH1_7; atonal protein 1/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266891 lncRNA upstream 23693 25143165 ~ 25144232 (+) False cacul1
XR_005637083.1 lncRNA upstream 48801 25117090 ~ 25119124 (+) False LOC120547601
TU266849 lncRNA upstream 48803 25117078 ~ 25119122 (+) False LOC120547601
TU266845 lncRNA upstream 50558 25113020 ~ 25117367 (+) False LOC120547601
TU266903 lncRNA downstream 9109 25178159 ~ 25181813 (+) True G196558
TU266908 lncRNA downstream 20380 25189430 ~ 25189679 (+) True G196563
TU266954 lncRNA downstream 50497 25219547 ~ 25219914 (+) True G196595
TU267020 lncRNA downstream 149216 25318266 ~ 25320869 (+) True G196648
TU267076 lncRNA downstream 258593 25427643 ~ 25433896 (+) True G196690
XM_039784272.1 mRNA upstream 3296 25144557 ~ 25164629 (+) True mypn
XM_039784767.1 mRNA upstream 23671 25139047 ~ 25144254 (+) True cacul1
XM_039784103.1 mRNA upstream 29376 25131454 ~ 25138549 (+) True sirt1
XM_039784104.1 mRNA upstream 30593 25131453 ~ 25137332 (+) False sirt1
XM_039783534.1 mRNA upstream 59845 25091886 ~ 25108080 (+) True herc4
XM_039784114.1 mRNA downstream 2054 25171104 ~ 25177459 (+) True pkd2l1
XM_039784295.1 mRNA downstream 22769 25191819 ~ 25197871 (+) True bag3
XM_039784597.1 mRNA downstream 29489 25198539 ~ 25213504 (+) True inpp5f
XM_039784598.1 mRNA downstream 29489 25198539 ~ 25210811 (+) False inpp5f
XM_039784596.1 mRNA downstream 29489 25198539 ~ 25210811 (+) False inpp5f
TU266801 other upstream 157164 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 598758 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 800326 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1562351 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2498458 22647914 ~ 22669467 (+) False tasp1
TU267128 other downstream 444357 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 648201 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 813695 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1494109 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1556709 26725759 ~ 26735787 (+) False tmem254

Expression Profile