RNA id: XM_039784235.1


Basic Information

Item Value
RNA id XM_039784235.1
length 6686
RNA type mRNA
GC content 0.47
exon number 3
gene id bcl11aa
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 31512864 ~ 31573621 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctccccttctctctctctctatctacctctctctcactctctctctctcttttttctctgctCTCCTTTCTCAAAAAAGCCATGACGGCGATCCCGCGATCCATCTTCGCCTCCGCGCCATCTTTGTATTATttctaatttattttctttttttcccctttttctcGTGGATGTCAAAGGCGTTGGATGAAGACATTCTTTGCCCCACTGGAGTCTCCTCTCTAACCCCGGCTCTCCCCGATGTGATCCGCGCTGAACACCGCCGCCGCCAGCCACCATGTCTCGCCGCAAGCAAGGCAAACCCCAGCACTTAAGCAAACGGGATTTTTCGCCAGCCGAACCCCTCTCCACGGCCGTCGTCTCGTCGGAGGAGCTGTCGGAGCGCTGCTCGGAGCACTCggaagaaagcggcagcctcAACGGGCACCACCACCACCCGGGCTCGGCCGTGGGCCGGCTGGCCCGGCTGGGTCACGACGCCCACGGCTCCCTGGAGCAGGACCTGCTGACCTGCGGCCAGTGCCAAGCCACCTTCCCCCTGGCGGACATCCTGCTCTTCATTGAGCACAAGAGGAAGCGATGCCATGGGCCGCCCTGCCTGGCCGTGGGCCGGGGGCTGGACAAGCCCCCCTCGCCCTCCCCGGGCCTGGCCCTCACCCCGTCGCCCGCGTTTGGCTCCCTGCGCAGCCGGAGGCCCGTGGAAGTGGGCGTCCAGGCCACCATGGCGGACGATGACGACGACCGCTTCCTATTGCCTCGGGGGATTTGCCCCAAACAGGAGCCCCTCCCAGGTAAGGAGGAGCCGACCACCTATACCTGCACTACATGTAAGCAGTCGTACGGCAGTGCCTGGTTTTTGCTGCAGCATGCCCAGAACACCCACGGCTTCCGTATCTACCTGGAAAGTGAACATGGTAGCCCTCTGACCCCACGAATGCGTGGGCCATCCTCCCTGGGTGGGGGCGCAGACTGCCCTTCTCAGCCTCCTCTTCACGGCCTCCATCTGCCTCCTGATGCAAGCCCCTTCAACCTCCTCCGCATCCCTGGCTCGGGCTCAGGTGGAAGGGACAGCGTGGGAGCAGGGGGGGGAATTGGTGCCATTGGCGCTGCTGGTGGGGGCCATCATCAGCGTTTCCCTCCTACACCACCTCTCTTCAGCCCCCCTCCAAGAAACCACCTGGACCCCCACCACCTGAGCCCAGAGGAGCTGGCGCTGGCAGCCCACCACCCGAGTGCCTTTGACAGGGTGCTGCGCCTCAATCCCCCTTTGCCCCTGGACCCCCCTCCAACAATGGACTTCTCGCGGCGGCTGCGGGAGCTGGCGGGCAACACTGGGTCCACTCCCCCGCTTTCCCCCAGCCGGCCCAGCCCCATGCAGCGCTTGCTCCAGCCATTccagacaggaggaggaagCGGAAGTGGAGGAGGTGCAGGGGGCAGCAAACCTCCATATCTTGCCACCCCACCCCCTCTTCCAGGGTCCATGCAGTCACCTGTGGGTTCTCAGACCACTCCTACTACCCCTCTTCCCTCAGCGGGGCCAACACCATCCTCCACCACCCCCTTGAAATCAAAGTGTTGTGAGTTTTGTGGCAAGGCCTTCAAGTTTCAGAGTAATCTAATAGTGCACCGGCGCAGTCACACAGGGGAGAAGCCGTACAAATGTCACCTGTGTGATCATGCTTGTACACAGGCAAGCAAACTGAAACGCCACATGAAGACACATATGCACAAATCCTCCTCGCCAAACACAGGCAAGTCAGAAGATGGTCTCTCAACAGCCTCCTCTCCAGAGCCTGGCACCAGCGAGCACTTGGGCAGCGCAAGCAATGCCCTTAAGTCAGTGGTGGCCAAGCTGAAGAGTGAGAATAATCGCATGCTACGTGAAaatggggaggaggaggaggaggaagaggaggaagaagaagaggaagaggaggaggaagaagaggaagaggaggaggaagaggagggggaggaagaagaagagcagaACGGAGAAAGGGCAGCCCGAAGAAACAATAGCTATCACTTTGGTTTGAACCTTGAAGCAGCACGTCAGCATGAAAACAACGGTGGTATAGGAAGCCGACTGGGCGGAGTTGCTGATGAGGGTTCCATCCCTCGCTCACTGCCTGAAGTGATGCAGGGGATgggcctagctgctagcatgcaTCACTTCAGCGAAGCCCTCAGCGCACACAAACGAAATGCCATGGCCCAGGAGAACCACCTGCACCACCACCTCAACCAAGACCATCACCACAATCGTGAGATGTGTGATGGAGACTCGGTGTTGGAAACAGATCGTGGGGCCGAGGGCTCTGTCTCGACAGTCAATGGGCGGGGAGCATCCCCTAATGAATCTGCCTCTGTTGGCCTCTCTAAAAAACTGCTTCTGGGTAGCCCCAGTCCACTCAGCCCTTTCTCCAAACGTATCAAGCTGGAAAAGGAATTTGACCTGCCCACTCCAACAATCCCTAACACGGAGAACGTCTACTCCCAGTGGCTGGCTGGCTATGCCGCCTCCCGACAACTCAAGGACCCTTTTCTGAACTTTGGGGATTCCAGACAATCGCCCTTCGCCTCTTCGTCTGAGCATTCTTCAGAGAATGGCAGTCTGCGTTTCTCGACCCCTCCGGGGGAACTGGACGGTGGGATGTCGGGCCGCAGTGGTACAGGCAGTGGGGGCAGCACACCACACCTCGGCGGTCATGGGCGACCGAACTCCAAGGACGGACGTAGGAGTGATACTTGTGAGTATTGTGGCAAGGTGTTTAAGAACTGCAGTAACCTGACAGTGCACCGGCGCagccacacaggagagagaccaTACAAGTGTGATCTGTGCAATTATGCTTGTGCCCAGAGCTCCAAACTTACTCGCCACATGAAGACCCACGGTCAGGTGGGCAAAGACGTGTACAAGTGTGAAATTTGTAAGATGCCCTTCAGTGTCTACAGCACCTTGGagaaacacatgaaaaaatGGCACAGTGACCGTTCTTCGAGTACCGAAATCAAGTCAGAGTAGAAGGCCGAACTATGGGACCTTTCCCCCGCAGCTATGTCCGCCATTCGTCCCCTGTTTATTCCCAGCCCCTTGTAGATTTGTCCCAACCCTAACGATCCACTTTCACCAGTCTGGTGGAAGCTTAAGACCATGTGCTCTGCACCAGCACACCCCGTTTCCATTACCCATTGAATGCATGATCTGTATCGGGGCAATACTCTTGCATTGACGCAAAACTTCGAGCCTTTCTCTTGTGCAATAATTTACATGTTGTGTACTATTTTCCTTTTTGAGTTTTCCTTTTCCATTTTTAAGAATTAGTCAGCATGCATAGTATGTTTTTGctaatcaaaaaaagaaaagaacttgTCCCTGGTTGGTTAGTTGTTGAGTAAATGTGTTGCTGTTTTTctcttgttctgtttttttctttttattcttcaaaaagagaaaagacaagAAAGATACATCCATGCTGCATACATTCTGTAACACATATCATGTACAGTTTTGTTTTGTAACATGGAAAGTGAACAGTCTGTGACTTGACCCTCCTCTTACAACCCTGGAAATGCACTCATCCTGATCTTTCTAAAAGACGGCATGTTCACACAGggttacaaaaaaaatcatgtatTGGCTTGATGACTAAACTGAAAGTTTGAAAATTTCTTTCAAAAAGACATGGGTGTGCTAAGAAGTCAATTTGTACTATCATTTGGTAGAAACGGAAAGAGTGCCTTTGATATCTCAAGACTGCATTGGCCATAATCTTATCTGGTATAAGTTTGGGGTCACATTAGATAAAGCTAAAAGGTTTAAGCCACCCAGGGACGGTCCTTGCATCAAGCACCTGACAGCTCAAAGGGACTGTGACAACTCATGATGAAAGATCAGAGAGTTGTCGTTAATCATGACTTAGCTACCTATTACATGTTCAATAGGCTATCTTTAATATGTGGATTTCATGGCAAGCATGGTACAAGCAGTATTGTGTATATCAGAATTATTTGTAGTTTTGTTTCTGGTAAGGAGGTACTTTTGAGATAAAGGTAATCTGTAATGTACAATCCTGAACTTGAGGGATACAGCGCATGGCTGAGAAGTGTCAATATATCTGCGTTAGCACAAACCTAGAACGCTGTTTCGATATGTCAGTGTGTGGAACAATGCATAAAGTAATATATGAGCTCCAAGCGAGGttaactttgtttgagagcATTGAAATAACTACAAGCTAGACAGACAGAAAGCTACACGGAACTGGAAGCATTATATTAGGGGATCAGAGGCAATCTCTTTCACTTTACATTTCTAATATCAAAACAGGGTCATTAACTATGAattccagaaaaaaaagaaagaaagaattgcaaaaaaaaaacatctttactCCAGGGCTCTTGAAAAGAGTGAATGCGATAATTTTAATCAGTATGCATAGGCTAATGCagggcactttttttttttttttttttgctgttgctTTTCAACCCAAAAGGAAATTTAGTTTTCCTTGTCTAGTTTCATTCAAGCTGTTCACAGTATAGCACTTGTCACTCTGCCTGAGAGTAAGCACCGACATCTCTCTTGCATTTTCCCACACTGATGCAAAAACGTTGGTACATGGGTTGAGTCCAAAAGCTAGATTGTCATTTAAAGGGCATGAAGTGCACTGTTTAAATTTTTCCCAGTTTACAAGTTTACgctgaaggggaaaaaaacattgttgaaATGCTGTCAGATGACAAGGGTCCCATTGTTAAAAGCAGTAAAAGATGAGACACGTAATCTGTTGCCAGCAAAACCACCCTCGTGAACCTTAACCTTTGTACCCCTGCCGTTCCACCTTTGACCATTTGTCAATTTGTTACCCCTAGAAACCCCAGCgcttagcctgggctgaaaatTCACCCCGTCAGCAAGGTCTGTAAACGAAAAGGTTTGACGCGAGTTACGTTCGTAACCAGCGTCTCTACATGGTCACAGAGTTGATGCGGCTCTCGTTGGCCACAGAAGCACCAAGCGCCCACCTTTCATTAAGGAGCTGTATCGCAACTTTGTTGTCATCTACGCCTGAATAATCTACAGACCTTGCTGGCTAGACAACAGACACTCAAATCTTGTTGCTCACACTGCGAGAATCTGTTTTTGTATAAATCTTCCTTTAATTATAGATATGAAAAATAAACGTTTTTGCAAATAACACTTCACTATCTTTTAGGGGGAAACTGTATTTAAGTTTGGTTGTCGTTTCTCTTTTCCTCAGCGTCTTGGTGGTATTCAAGACTCCGATCACAGTATAtatgaaatgataaaaaaagaaaatagacggaaaaaaaacaacaaaaaacaaaaaaaattctgtgatggttttgtattttattttgccttggCTCTTCACAGCTCTTCAGGTTGAAATACAATTTGCATTGGGGAAAGGATTAAGATTATATATGGATATATAATAAAGAACTTAAAATATAGGAAAATGCACACTCATGTCGATTCCTATGCTTAAACACATTTATGGTCTACTTTTTCTGTATTTCTAGAACTGTATTTGAATTCAATGTTCACTTAGAGTAGGCACTATAGTATTTATATTGAGGCTCGTATTTTTAACTGTTGCTTGTTCTCTCTAAAGGTATTTACCATACCTTTTTTTGgtagtggaaaaaaaaatcccaagcTGCCAcggtatatttttttaatttggcagGATAATATAGTGCGAATTATTTGtatgtttaaagaaataaaaggaaaaaaaacccaTAAAAAGCAGCTAAAGTATGTGGCATCGGGAGGCGTCACGGGCCATCAGATGGCCGCCGCTCTGTTTCCTGTCCACAGAGGTGGTTGTACATATCTTCTTTGGTTTTTGGTTCGGACCCCCGCCCTCCCCCACCCTGCTGCCATTCTTGTATGCAGTAATGCAAGCTGACGTCAGCCTGTTCTGTTGTGtgcttctgtctctctcacccCTCCCACCTGACTACATTCCAACATCAAgaagtgaggaaaaaaaaagaaaaacaaacttcaTATGCAGTACATGGATTACGAgaaaaaaaagcgtcaaaataaatacatttaaaaagaaattaaatgttttgcagtttttttttcattgccaAATACTAAATGGtgctttatattttagattggGTATACTTTCATATGCAaagcatatttaaaaaatgacccGGGGGACGTGGAGAAGCCTGCTTGAGTTGAGACTTTTTTGTAAATGGCAATGCGGAATATtttgttatcagccttttctattCCTATTCTGAGAGCTGTTTGTtgtaacttgaacttgaactttaTCTTTTACTATGGGAGTTACTATTTATTATTACCTTTATGCTCTGTTCAAAACGGAGACATGGAATGGATCTTTATTTTtggtttctttttattttatttttttcatttttggttaTGATATAAtttggatttatttttcttttgtaatgGTGGCCCATGGTCATTGGACAAACCTAGCTCTTTCATTTCTGTTGTACTTTTTGGGGTCTCTGTTCAGTTGTATTGGGAAAACCACTGTCTGTGTTTTCTGGCAGATGTCTGCATAATCCTGTTCACACACCCATTTTGTCCCTTTATCGaaaaacaattaataaaaaaaatgaaagtataATGGCA

Function

GO: NA

KEGG:

id description
K22045 BCL11A; B-cell lymphoma/leukemia 11A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637122.1 lncRNA upstream 100829 31409523 ~ 31412035 (+) True LOC120547953
TU268688 lncRNA upstream 260993 31251389 ~ 31251871 (+) True G198004
TU268686 lncRNA upstream 270582 31240945 ~ 31242282 (+) True G198002
TU268674 lncRNA upstream 306508 31206091 ~ 31206356 (+) True G197991
TU268666 lncRNA upstream 310391 31200856 ~ 31202473 (+) True G197983
TU268785 lncRNA downstream 51387 31625008 ~ 31625225 (+) True G198082
TU268792 lncRNA downstream 175052 31748673 ~ 31748908 (+) True G198089
TU268793 lncRNA downstream 278669 31852290 ~ 31852614 (+) True G198090
TU268794 lncRNA downstream 355148 31928769 ~ 31928980 (+) True G198091
TU268798 lncRNA downstream 375000 31948621 ~ 31948925 (+) True G198095
XM_039783784.1 mRNA upstream 19644 31342959 ~ 31493220 (+) False LOC120547952
XM_039783783.1 mRNA upstream 19644 31342960 ~ 31493220 (+) True LOC120547952
XM_039784893.1 mRNA upstream 314173 31183320 ~ 31198691 (+) True ogfrl1
XM_039784116.1 mRNA upstream 507841 30711573 ~ 31005023 (+) True LOC120548109
XM_039784117.1 mRNA upstream 507841 30711573 ~ 31005023 (+) False LOC120548109
XM_039783866.1 mRNA downstream 871466 32445087 ~ 32483666 (+) True fancl
XM_039783509.1 mRNA downstream 1083365 32656986 ~ 32659866 (+) True LOC120547814
XM_039783143.1 mRNA downstream 1088466 32662087 ~ 32666672 (+) True LOC120547622
XM_039783203.1 mRNA downstream 1205895 32779516 ~ 32783434 (+) True LOC120547668
XM_039783510.1 mRNA downstream 1584108 33157729 ~ 33199862 (+) True slc2a15a
TU268683 other upstream 278141 31234364 ~ 31234723 (+) True G197999
XR_005637093.1 other upstream 1311044 30153511 ~ 30201820 (+) False LOC120547658
XR_005637094.1 other upstream 1311083 30153511 ~ 30201781 (+) False LOC120547658
TU268204 other upstream 1893848 29536519 ~ 29619016 (+) True LOC120547718
TU268894 other downstream 1219667 32793288 ~ 32794661 (+) True G198185
TU268961 other downstream 1388767 32962388 ~ 32965074 (+) True G198245
unassigned_transcript_1124 other downstream 2128665 33702286 ~ 33702357 (+) True trnaw-cca_27
XR_005637201.1 other downstream 3300829 34874450 ~ 34874577 (+) True LOC120548589
TU269549 other downstream 3370651 34944272 ~ 34948428 (+) False LOC120548523

Expression Profile