RNA id: XM_039784242.1


Basic Information

Item Value
RNA id XM_039784242.1
length 3428
RNA type mRNA
GC content 0.53
exon number 24
gene id zmp:0000000755
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 24062755 ~ 24122075 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCCCCTATCAGTAATGACATGCCCCGCCCCGTCTATCAGCATCTCCAGTCAGTGTAGAGGAGCTGGGAGTCTGGAGGAGCAGGAGCAGGCAGCACAGAGTTCAGCGGCTCCAGCGTTCGTCCGACACTCAGCTAGAGCTGCTCTCCAGGCAGTGGAGGTGATGATGGCGGCGGCTGTAGAGAGAGGAGGCGTCCGGGCCGCTTTCCTGAACCCGAGCAGCGGTGGCGGCGGTGGACCAGCACCGACAACCCTCCAGACTGGAGCGTTAGCCGGGGCTGTGGTCCTGGGCTCGGGCTCCGACAGCATGCCTGTACCCATGAACCTCTTTGCGACCTGGGAGATAGACCGATCATCCCCAAGCTGCGTTCCAAGACTGTGTAGCCTCACGCTGAAAAAGCTGGTCGTCCTCAAAGAACTGGATAAAGAGCTGAACTCCCTGTCTATAGCTGTCAAAATCCAGGGTTCTAAGCGTCTTCTGAGATCAAATGAGTACGTCCTCCCACCCAGTGGAATGATGGAGACAGATCTGGAGCTCACATTCTCACTACAGtaCCCCCATTTTCTGAAGAGGGATGCCAACAGACTGCAGATTATGCTGCAGAGGAGGAAACGCTACAAGAATCGAACAATCCTGGGCTACAAAACTTTGGCTGTGGGAGTTATCAATATGGCTGAGGTGATGCAACACCCGACAGACGGAGGACAGATTCTGGGTCTCCATAGCAACGTGAAGGAGGCGCCAGTGCGTGTGGCGGAGATCAGCGTGTACTCTCTGTCCAGCCAGCCCATCGACCACGAGGACGGTAGCGGCCAGGCTGGCCGCAAGACCAAAACCTCAGACCGCTCCCCAGACATGGATAACTATTCTGAGGAGGACGATGACAGCTACTCGTCAGAGCAGGAAGCCAGCGATGATGCAGTTCATGCCCAGGATCTTTATGATGAAGACGACGAGGTCAGGAAGCCTAAGAAAGCCCGGAGGAAAATGATCCGAACCACCTCCATGACCAGGcAACCTAACTTCAAGCAGAAGTTTGTGGCCTTGCTGAAGAGGTTCAAGGTAACAGATGAGGTCCTGGACTCCGACCCAGTCGACCAGACTCAGGAAGTGGAGGAGGATCTGGACTTACTCTACGACAGTCTGGAGGTGTACAACCAGAGCGACAGTGGGCCAGAGATGGAGGACAACGAGAGCGTCCTGAGCACGCCCAAGCCCAAACTCAAGCCGTTTTTTGAAGGGATGTCTCACTCCAGTTCCCAGACAGAAATTGGAAGCCTACACAGCCAAAAAAGCCAGCAGAGAGAGCTGTCGTGTCCTAGTGGTGAATTTCTGACTGTGGACAGATGTAAAGTGCAAGGGGCCCGGAATAAAGACGACAGCGTCACAGATACAACCGTTGGGGAGCCAGAGGCTGACGACAGCGGGCCAGGGCCGGGGGAGGTGAGCAGCTGGGATGTCAACACCGAACGGATGAGCAGCACTGTTGGCAAGCTCTGCAAGACCGAGTCCCAAAACCACATGTCTCCCAGTAAAGTGGAGAACAGGCTGCAGAGGCGTCCTCGCAGCACCTCCATGAAAGACCGACAGAACTCCAAGGCCCAGAGCGACAGAACCAGCAGCATGGAGAGCGAGTGCTCCCCAGACTCGCGTCTCATAGCACAGGTTCCAAGGAAGTCCGTGTATGACCAGCTGAACCAGATCCTCATCTCCGACGAACGCCTGCCAGAGAGCATCATCCTCATTAACACCATGGAGTGGCAAGGACAGTATGTATCCGAGTTGCTCCATGAACAGGGCCAGCCCATTGTGTCCACCTGCTCTGCTGCCGATGTTCAAGCTGCCTTTAACACCATCGTTACTCGCATCCAGAGATTCTGTAACTGCAATGCACAGACACCACCGACGATGAAGGTGGCCGTGGCAGGCGACCAGAGTTACCTCAGCACCATCCTGAGGTTCTTCGTGGAGCAGCTGGCCAACAAGACACCTGACTGGCTCAGTTACATACGCTTCCTGGTGATCCCCATAGGTTCTCATCCCCTGGCAAAGTATGTGGCCTCCTTTGACAGCAGGTTCAACAGCATCTTTATGGACACTGCATGGAGGGAGCTGTTCTGCAGGACGGAACGGCCCACCTCAGACAACATAGACGTAGCAGGACGAGTCGTTCAGTATCTGGTCGGTGCCAACGTGTCCCACCAGTTCCCCATCTCAGAAGCAATGCTCACCTACAAACAGAAGAGCCCTGATGAGGACTCCTGTCAAAAATTTGTGCCATTTATTGGGGTTGTGAAAGTTGGGATCGTGGAGCAAAGCCTCTCAACTTCAGTGGACTCCGATGATGCGATGGGGGTCAACACAAGCATCCTGTCCTCCCCAACGCCCCCATCGGCCGGTCCGTATGGGAAGGAAATTGGGGGCACCCCCCCACAGTCGCCCTCTGTGTCCACGGCCCTGTCAGGAGCTGGCTCTCCATGTTCGGGCAGTGAAGTGATGGGGCTCCAGGTGGACTACTGGACATGGCAAGgcccagagaagaagaaagagggggAGAAGAGAGACGTGGGACTGAAGAACACCCTGAAGAGTAACTTCCGGTCACTGCAAGTCAGCCGTCTGCCCTGTGGAGGGGAACTCACCCCCCCGCCCAGCATGGCCATGACTGTGGTCACCAAGGAGAAGAACAAGAAAGtGATTTTTCTCAGCAAGAAGCCCAAGGAGAAAGAGCTGGACTCTAAGAGCCAAGTGATTGATGGCATCAGCAGGTTGATCTGCACCGCCAAGCACCAGCACACCATGCTGAGAGTCACTATTGATGGAGTGGAGTGGAACGATGTGaagtttttccagctcgctgcCCAGTGGCCGACCCATGTCAAGCACTTCCCGGTGGGAATCTTTGGTTACACTAAGCCCGTGTGACCCTGGCCACCGTCCACTCAACCGCCACCAGAATCTCCGCTGCACTTGTCTCACCGAGAGGCTACAGAGAATTAGAGGAAAAGCCAACAGGGCTCCCCCCCGGCAGTAATAGTTTTCCTGTGGAAATCTTACTGACTCACAACCACATGTTCAATCCACAAATTTAATGTTGTCAATTGGATGTTTTTGATGTTGttgggtgttgttttttttttacacactacAAAAAGAACAAGTACTATTTTGTAAGATTTGTGCTACCGCCTCGGAGGTATTTTGAGGTTTTGACAATTTGCCACATTTCGATAATGGCAGCTGTGTttgcactttgtttttgttaacattttattatttctgtGAAATCCTACATTTATTGTTACTCTATAGACAATGGAGGAGTGTGATGGTGACGTGCAGTGGCGTGTGTGAGATTGTTTGAGACCGTGTTTGTCGTTGAAAGTTGGAATATTGCTGTGAATCTAGATGGAATCCTTCTCTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637177.1 lncRNA upstream 188592 23870544 ~ 23874163 (+) True LOC120548378
XR_005637176.1 lncRNA upstream 189004 23870544 ~ 23873751 (+) False LOC120548378
TU266559 lncRNA upstream 241578 23818985 ~ 23821177 (+) False klhdc3
TU266482 lncRNA upstream 451418 23599208 ~ 23611337 (+) True disc1
TU266377 lncRNA upstream 518917 23543607 ~ 23543838 (+) True G196195
TU266586 lncRNA downstream 866 24122941 ~ 24124149 (+) False G196328
TU266606 lncRNA downstream 38538 24160613 ~ 24162215 (+) True G196336
TU266607 lncRNA downstream 42125 24164200 ~ 24164631 (+) True G196337
TU266595 lncRNA downstream 146198 24268273 ~ 24270052 (+) True G196332
TU266592 lncRNA downstream 146288 24268363 ~ 24270052 (+) False G196332
XM_039783049.1 mRNA upstream 201888 23855715 ~ 23860867 (+) True npas4l
XM_039783051.1 mRNA upstream 201888 23855982 ~ 23860867 (+) False npas4l
XM_039784197.1 mRNA upstream 211150 23818914 ~ 23851605 (+) True klhdc3
XM_039784505.1 mRNA upstream 292335 23766603 ~ 23770420 (+) True ntpcr
XM_039784504.1 mRNA upstream 297373 23762408 ~ 23765382 (+) True map10
XM_039784245.1 mRNA downstream 8709 24130784 ~ 24160603 (+) False klc1b
XM_039784247.1 mRNA downstream 8709 24130784 ~ 24160603 (+) False klc1b
XM_039784243.1 mRNA downstream 8709 24130784 ~ 24160601 (+) False klc1b
XM_039784246.1 mRNA downstream 8709 24130784 ~ 24160601 (+) False klc1b
XM_039784248.1 mRNA downstream 8709 24130784 ~ 24156934 (+) True klc1b
XR_005637111.1 other upstream 457181 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 1393288 22647914 ~ 22669467 (+) False tasp1
TU265655 other upstream 2547627 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 2731468 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 3308946 20752773 ~ 20753809 (+) True G195518
XR_005637109.1 other downstream 235851 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 442475 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 886437 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 1491332 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 1695176 25817251 ~ 25824677 (+) False LOC120548053

Expression Profile