RNA id: XM_039784249.1


Basic Information

Item Value
RNA id XM_039784249.1
length 3850
RNA type mRNA
GC content 0.46
exon number 15
gene id klc1b
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 24130784 ~ 24160603 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGCTGCAGAGGCTGCTGGGAGAATCTGGCTGTGTCGGAGACATTTTGGATTTAAAGGGGCTGAGCCGTCAGTCCTAGCTCTTGGTTTCCCTGAGCTAACTAGAAGATGTCCACCATGGTGTATCCACGGGAAGAGAAGCTGGAGAAGCTCTCTCAGGAAGAGATCATCTCCAACACAAAGCTGGTGATCCAGGGTCTGGAGGCCCTGAAGAATGAGCACAACTCCATCCTCCACAGCCTCCTGGAGACCATCAAGTGCCTAAAGAAGGATGAAGAGGCCAACCTGGTGCACGAGAAGTCCAACCTGCTTCGCAAATCAGTGGAGATGATTGAACTGGGCCTGGGAGAAGCTCAGGTGATGATGGCCCTGTCCAACCACCTGAACGCCGTGGAGTCTGAGAAGCAGAAGCTGCGCGCGCAGGTCAGGAGGCTGTGCCAGGAAAACCAGTGGCTGCGGGACGAGCTGGCCAACACCCAGCAGAAGCTGCAGAAGAGCGAGCAGAGCGTGGcccagctggaggaggagaagaagcacCTGGAGTTCATGAACCAGCTCAAAAAGTATGATGAAGACGTCTCACCCACTCAGGAGGAGAAGGACCGAGAACCACCCAAGGACTCCCTGGACGACCTCTTCCCCAACGATGAGGAGGAGCATGGCCAAGGAATGCAACACCAACACAACAGTGCAGCCGTGGCTGCGGCCCAGCAGGGAGGCTACGAGATCCCGGCCCGTCTGAGGACCCTGCACAACCTGGTGATCCAGTATGCCTCCCAGGGCCGGTACGAGGTGGCTGTCCCCCTCTGCAAGCAGGCTTTGGAGGACTTGGAGAAGACTTCCGGACACGACCACCCTGACGTGGCCACCATGCTCAACATCTTGGCCTTGGTCTACAGAGATCAGAACAAATACAAAGAGGCCGCCCATCTGCTCAACGATGCTCTGTCCATCCGTGAGAAAACCCTGGGCAAAGACCACCCCGCTGTCGCTGCGACGCTGAACAACTTGGCTGTGCTGTATGGAAAGAGGGGAAAGTACAAGGAGGCTGAACCTCTGTGTAAGAGGGCTCTGGAGATCAGAGAAAAGGTCCTGGGGAAGGACCACCCAGATGTGGCCAAACAGCTCAACAACCTGGCTCTGCTTTGCCAGAACCAGGGCAAGTATGAGGAGGTGGAGTACTACTACTGCCGTGCCCTGGAGATCTACGAGAGCAGGCTGGGCCCAGATGATGCCAATGTGGCCAAAACCAAGAATAACCTGgCATCCTGCTTTCTCAAACAGGGGAAATACAAGGAGGCTGAGATTCTGTACAAAGAGATTCTGACTCGTGCTCATGAGAAAGAGTTTGGATCTGTTGATGCTGAAAACAAGCCCATCTGGATGCAcgcagaggaaagagaggagatgagCAAGGGCAAGCACAGAGACAACACTCCATACGGAGAGTACGGAGGCTGGTACAAGGCCTGCAAAGTCAACAGCCCCACAGTGAACACCACCCTGAGGAACCTGGGCGCCCTGTACCGCCGGCAGGGCAAGCTCGAGGCTGCCGACACCCTGGAAGAGTGTGCTGTGAGGTCTCGCAAGCAGAGCAACACAGGCATTGACCCCATCCACCAGACACGTGTGGTGGAGATCCTGAAGGATACAGACGGCGACAGGCGGAGGAGCAGGGACAGCCTGAGCAGCGTTAAGTATGAGAGCGGCTCTGAGACCGGCGAGGAAGCCTAAGCCATCAAGATTAttcctccatccttctctcctTCCCCAACACCATTGCAAAAAGGATGTGTGTTGTCGTTCCCTCTGGCCTTCTCTGTCCCAAACAAACCAACAGCATCCTCCACCATTCCCGGTGCCCCCCTCTCCGGTCGCAGAGACTCAGAAAGCCCCCTCCTGGCTGTCACCTCTGTCCCCCTGTTCAGCTGACACCTGCTGGGACGTTTGGTCttctcttattttattattttttttttttaacctctctTCCTGTCACTCTCTCTATCCTTTCCTCTCACTAACCCTGTGTCCTCCACCGTGTCAGAAATCGTGAattcaactctctctctctctctctctctatctctctcactTAACATTAAAAAGCAAACTTCATTGTGTGTGAAATCTTTTCCCTGTGAGGAAGCCACTCGCACTTTTTTCTTCCTCCAACACCCATTTGTAATTTTTCATAGGCGCATAGTAGATTTATTTGGCTAGATAAGAGGAGCAGGAAAGTAATTTATTGGAAGAAGGCAAAAGATGAAAGATTTGGAGGATCAGGGTCACCCTTTGAAGGCAGCCAGACATCACTCCAACCCACAGTCAGATAAAACGTTACAATCACTATAGAGTGGATATATTACAAAACTCCACAGTTGCTCTGCATTGGTCTCACTCGCAGTTTGTTAAAGATGACCTCAAAGCTAGCTTGCAACCTGGTGCCTGTATTTAGCCAAaatagtatttttattttttatttttaaggaaaggtatttatttttgctgttagttttctgtttttaactattttaacaATAACGAGATCAAATGCCTGAACAGTTTGGAAATAAATGGTACTTTATAGTATATAACATGCTTATCAAAATatgtcatgtcttttttttacttctgtgGCTGGCGGGAAATTAGAAGGGAGCATTGCTTCTCaacatttagtattttttttttttttttttatagagatatttcctttttaatttcaattttgtatgattttgtttacatttttttttttttaaatgttgatttattttgtggCTGAATATTAAGGCAGTTAGTCAGTCAACCATGCCTGTTGTGAAAGACTAGTAGGGCCAACATCGGCTGACAGCAAATTGGCTAGATCACAGCAAGctgttgttgccatggtaattTATTTTCAAGATGCTTTCATGAGCTTCAATGTCCTTGGTTTTGGAGCGTTCACACTCGGCTCTACGCTGGTACAATAAGTACACAGTAGCTTGCATTTACAAAGGGAATTAACAACACCGGCTGATGGTGTAAAGCCAAAATGACCGCAGAGACCAACCGGAGCATCTAGCACAGACACTGGCCACCTGGGAAATTGCTAAATAATagtacatttcaaaataatggGCATACATGCCCAgaattgcatttttatttgttgGTATAGAAGTAGAAGCTAGTGTTATTATTCAATGGAAGCCTGGGTAGTTTTattagtgtgtatttgtgtatgttttgGTGGTACAGTCGCAGTGCCCACTCTGGCTATGGATACTGTATTTTGAACACGAAGCTTAATGGAGTGTGTTgcctttttttcttacaccGTTGTTTGCAAGCAAACCTTGTCACTTTGGtgaatcgtgtttttttttcgaCACCGAAAAGTACAGTGCGAGTGTTTCCTCAAGATCAACATGTTATTTCAGATGTTTAACTAACTGAATGTAAAATGACTTTAACATCTTTAAAGTGTAATTGTAGGCTGTATTCATAGATTTGACAAGTGCATTCACTATACGGCTTTTTCGGTATGCTACTTGCCTTGATTCTTCATTCCTTCCAACGAGTACACCTATACTCCTAATGCGACTCTGAACAAAAGAATTGACCATGTACATCATATAATTATGACAATATTGTTGTGTTAGTGGAATGCTTATTTATTGAACTGTCTATTCTTGGCATATATAGTGTGATTTGAGTTTCCTAAAGTGGAAGAAACATAAATGGTAAGGTCTATAAGCACTATCTTAGTAAGTAGAACTGCATTATATTTACCATTCTGCATTGTGAAGATTATTGCATCAACACTTGTTGGTATTCTCGAATAAAGTTTTTCATTTGTGaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266587 lncRNA upstream 6635 24051189 ~ 24124149 (+) True G196328
TU266586 lncRNA upstream 6635 24122941 ~ 24124149 (+) False G196328
XR_005637177.1 lncRNA upstream 256621 23870544 ~ 23874163 (+) True LOC120548378
XR_005637176.1 lncRNA upstream 257033 23870544 ~ 23873751 (+) False LOC120548378
TU266559 lncRNA upstream 309607 23818985 ~ 23821177 (+) False klhdc3
TU266606 lncRNA downstream 3679 24160613 ~ 24162215 (+) True G196336
TU266607 lncRNA downstream 7266 24164200 ~ 24164631 (+) True G196337
TU266595 lncRNA downstream 111339 24268273 ~ 24270052 (+) True G196332
TU266592 lncRNA downstream 111429 24268363 ~ 24270052 (+) False G196332
TU266594 lncRNA downstream 111429 24268363 ~ 24269986 (+) False G196332
XM_039784241.1 mRNA upstream 8709 24062755 ~ 24122075 (+) True zmp:0000000755
XM_039784242.1 mRNA upstream 8709 24062755 ~ 24122075 (+) False zmp:0000000755
XM_039783049.1 mRNA upstream 269917 23855715 ~ 23860867 (+) True npas4l
XM_039783051.1 mRNA upstream 269917 23855982 ~ 23860867 (+) False npas4l
XM_039784197.1 mRNA upstream 279179 23818914 ~ 23851605 (+) True klhdc3
XM_039784768.1 mRNA downstream 55038 24211972 ~ 24245841 (+) True ptk7b
XM_039784319.1 mRNA downstream 91264 24248198 ~ 24268024 (+) False srfb
XM_039784321.1 mRNA downstream 91264 24248198 ~ 24268023 (+) False srfb
XM_039784318.1 mRNA downstream 91264 24248198 ~ 24268013 (+) True srfb
XM_039784317.1 mRNA downstream 91265 24248199 ~ 24268023 (+) False srfb
XR_005637111.1 other upstream 525210 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 1461317 22647914 ~ 22669467 (+) False tasp1
TU265655 other upstream 2615656 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 2799497 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 3376975 20752773 ~ 20753809 (+) True G195518
XR_005637109.1 other downstream 200992 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 407616 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 851578 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 1456473 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 1660317 25817251 ~ 25824677 (+) False LOC120548053

Expression Profile