RNA id: XM_039784276.1


Basic Information

Item Value
RNA id XM_039784276.1
length 793
RNA type mRNA
GC content 0.49
exon number 4
gene id mcfd2
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26619417 ~ 26622570 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTACGGCAAGCCACTTGGTCCTCAAAGGTTGTGATTGATCATTGTTGCCAGCCAACTAGTAAAACAACATAACTGTCCACGGAGTCAAGTGAAGATAGGCAAGGGATAAATATTTTCAGCAGAATGAGCAGTTGCAGGTGTAGTGTGCAGTGGGGGGGtctgctcctcctcctgtcctgctgtctgctgtgtgtTGACTCTCAGGTGGAGTCACAGCCTCAGCAGCAGCCTCCCCCGCCGGTCATAGACAGTGGAGCCTCCATATCCGGCCACGCTCACGGCCGCCTGGACAGAAACATGGTCCAGGACAAAGACCACATCATGGAGCATTTAGATGGAATGATAGACAAACCAGAGAAAGAAATGACACCCCAGGAGCTTCAGCTGCACTATTTCAAGATGCACGATTATGATGGCAACAACCTGCTGGATGGACTAGAGCTAGCCACAGCTATCTCACATGTACACCGAGAGgagagaggagaggacagccAGCCGTTGAAAGAGGAGGACCTCATCACTCTCATTGATGATGTTCTCAAGGACGATGACAAGAACAATGACGGTTACATAGATTATGCAGAGTTTGCCAAATCGCTGGAGTAAGATGTCCCCTGAGAACTTACACACTTCAtaccaacaacaacagcaacaacaacaaggaaTCTGCAGAGAAAAGAAGGCCAACTGAGTAGCCACCAAGCTGTCTTGGAAAACCATTGTTTACTCTTTGCTTTCTCTCTCGCAGGCGATCAGTCAGGGCTATTGATAATTTATAAGgtttgggacatt

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20364 MCFD2; multiple coagulation factor deficiency protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267513 lncRNA upstream 79282 26539844 ~ 26540135 (+) True G197029
TU267510 lncRNA upstream 80144 26538481 ~ 26539273 (+) False stpg4
TU267508 lncRNA upstream 86183 26533032 ~ 26533234 (+) True G197027
TU267441 lncRNA upstream 308131 26291118 ~ 26311286 (+) True G196967
XR_005637135.1 lncRNA upstream 489886 26122891 ~ 26129531 (+) True LOC120548056
TU267520 lncRNA downstream 2065 26624635 ~ 26627702 (+) True G197035
TU267521 lncRNA downstream 2065 26624635 ~ 26626781 (+) False G197035
TU267570 lncRNA downstream 117687 26740257 ~ 26746085 (+) True G197069
TU267571 lncRNA downstream 117687 26740257 ~ 26743147 (+) False G197069
TU267581 lncRNA downstream 261749 26884319 ~ 26953805 (+) False pwwp2b
XM_039783202.1 mRNA upstream 70657 26535284 ~ 26548760 (+) True stpg4
XM_039784131.1 mRNA upstream 87691 26527783 ~ 26531726 (+) True calm2a
XM_039783071.1 mRNA upstream 97840 26495508 ~ 26521577 (+) True si:ch73-105b23.6
XM_039784292.1 mRNA upstream 142690 26414524 ~ 26476727 (+) True plekhh2
XM_039783140.1 mRNA upstream 638980 25977457 ~ 25980437 (+) True hcar1-3
XM_039784776.1 mRNA downstream 103146 26725716 ~ 26735774 (+) True tmem254
XM_039783258.1 mRNA downstream 135763 26758333 ~ 26767338 (+) True LOC120547700
XM_039782998.1 mRNA downstream 243055 26865625 ~ 26873668 (+) False LOC120547537
XM_039783000.1 mRNA downstream 243238 26865808 ~ 26873668 (+) False LOC120547537
XM_039782999.1 mRNA downstream 243469 26866039 ~ 26873668 (+) False LOC120547537
unassigned_transcript_1122 other upstream 636579 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 794740 25817251 ~ 25824677 (+) False LOC120548053
TU267128 other upstream 998742 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 1608656 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 2050250 24564550 ~ 24569167 (+) True G196439
TU267544 other downstream 40589 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 103189 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 303848 26926418 ~ 27109140 (+) False LOC120547882
XR_005637159.1 other downstream 2490118 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 2490312 29112882 ~ 29114881 (+) False LOC120548242

Expression Profile