RNA id: XM_039784292.1


Basic Information

Item Value
RNA id XM_039784292.1
length 6720
RNA type mRNA
GC content 0.51
exon number 29
gene id plekhh2
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26414524 ~ 26476727 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACCACACCCTCTAAGTCCAACCCTGCTCCAACTTTTTGCCTTTGGGCTGAAATGAAATCCTTGGGCACGAGAGAAATTCACCGTTTTACTCATGAATTAGGACTTTCTCCATCAGGAATAACAAGAAATGTTTAGACGCCGGAGTCGACATGGCGTGAAGTCCCTCGTATAGTTTCTATCCATCAAATATTGAAAGGagGGTTGGGCGCTATGGCGGAGGGGGAGGAGGCCATGAGCCAGGAGGACTGGAGGGAGAAGTGTATGGTCCTGGAGGCCTTGCTCATGAAGTTCAGAGTGCAGATCGTCAAGATTCGAGAACTCACCGCTGACAAGATTCAACAATTGGAGACGCAGGTGATCGATGCTGAGAAGCGGGCCTTCACCGCTCACCAACAGGTGCAGTGGATGGAGGAGAAGCTGAAAGCTCCAGACAGCCAGTCCGGAGACTCCGAGGTGCGTTTGTTCCAGCGCTGCCAGGAGCTGCAGGCCTCGGTGCAGGAGAAGGAAGACGTTATCGGCCAGCTGGAGCAGCAGCTGGAGGAGcagAAACAGATCCGACTTCAGGATGCCAAAACGGTGGAGGAGAAAGCAGCTAAGATCAAGGAATGGGTGATGCTGAAGTTGTCAGAGtttGAGGTGGAGAACGCAGCATTAAGAGAAACCAACAAGCAGCAGGAGGCTCAGATTGTGGAGTTACAGAAACAAGTGCAGGCCTTTGAGCAGAAGTGTGGTGGGGGACGAGGAGTCCTATGCAGACCAGGGGAGGCCCAGCGTCTCAGCAGCCTGACGTTTGGCTGCTTCCAGGTGAGGGGGAAGAGCCCCCAGGTCCTCACTGGACCAGCACCCTGCCAGAGGAGCCTGAGCACCCAGGGAGAGACTGAGGGCAGAGATAAGACTGAGAAGAGTAGTAAGCAGACAGTCTTCTCAGGGACAAACGGTGAAGTCCAGACCCCTGACCAGACTGGACTTCTGGGTAATCCTCTGGAGGATGACAGTGCATCTGAAAGCCTGGGTGAGGAAGCACGTGGACCTGAGTCCCGCAGCGTCTCTTCCGTTCTCTCCAGCGCTGCAtcagagggggagggaggaggaggagggtgtgagggcagaggaggaggaggaggagggtgcgCTCTGGAGTTCAGCCGCCCCGGCAGTGACACCTACCTGACTGCTTCGGACGACAGCAGCTCTCTGTTCGACGACGACATGCAGCGCGCCGAGCGGCCCCGCTTCAGCCTGCTGGGCTCATCGGAGGGGACTCTGGGAGGCTGTAAGGATGGGGAGGAGGCGGGGGGGGAGGCACACAGGGCCAAGCTGGAGGACTGCACCTCAGAGGAGCTCAACAAGCGATTCCAGTCGCAGAGACTTgactcctcatcctcctccggCGACGCTTACACACCCAACCCCATCCTCACCCCAGCCCTCACCCCTAAACGACCCAACCCACCCCAGGACCCGAGGGATAACCCTGCATCGCCCAAACAGCCCCGGCTGCGGACCCCAGCGGGGTTCGGGTTGACGAATGTGGCTCTGGCCAAGAAACACCTGAGCCAGCCACCGATCAGCAGCGAGGCGGCACACGGACTAACACGCAACGCTCTCAGCATGCTGCGCCCCCTCCGGCCGCAGGAAACTGACCTCGACCAGGAGCAGGAGGTTGGCATGGAGACGGGAAGGGACACGCCTCCTCAAAGCCTCCCTTGCTCACAAGCCGCGCCTCCATTTCCAACCTTGCAGACATCACCCGCTCCACCTGAACCTGGTACAGAGATCAGCCCAGAGAAGGAAGACTGTGACAGCTCAGCACCGCCTACACCCCCTTTGCACAGGCTGCCCTCCTGGgaGAGTCGCATCTATGCTGTTGCTAAATCAGGAATCCGACTGTCTGAAACATCCTGCACAGACCCTGCTAGCAAAGACCCTTACCTCCAGTCCTCCTATCCTGCCTTTGTAATGTACACATCcctcatttataaaaacatgacTACTCCAGTTTACACTACTCTGAAGGGGAAAGCCACCATGCTGAGCAGCAGTCCGTTCTCAGATGAGTCGTCCAGCTCCGAGGAGTCCTCTAGCTCCGGAGAGGAGGATGGCTCCCTCTGCAGCTCCCACACCTCGTCCAGCTCCCGCAAGGACAGCAGCCCGGGCAGCCCACGCTCTCTCAAGAGAgCTGTGTCCATGTCTTCTATGACATCAGAGAGCGACTATGCCATCCCTCCTGATGCCTACTCCACCGACACAGAGTGCTCTGAACCGGAGCAAAAACTCCCCAAAACCTGCTCTACAGCCAGTGACAACGGCAAGAGCGAACCAATGGAGAAGTCAGGCTACCTGTTGAAAATGGTGAAGACCTGGAAGAAAACATGGAAGAGACGCTGGTTTGTCCTCAAAGACGGAGAGCTGCTCTACTACAACTCACCTAGTGATGTGATCAGAAAACCTCAGGGTCAGATCGAAGTCAATGCCACCAGCAGCATCGCCCGTGGAGATGGAAAACAAGTCCTCCAGGTGGTGACAGGGAAGCGTGTGTACTACCTGAAGGCTGACTCCCCTAACCTGCTGGAGGAGTGGCTCAGGGTGCTGCAGAGCGTGCTCAGGGTGAAAGCTGCCAGTCCTCTATTCACCCAGCCGGATATTCGCCCCGGCATGAAGGGACTGCTCATCAAGGTCCAACACTTttatttcagtgtgtgtgtgtgtgtgtgtgttcgtgtgtgtttCCAGTTCCCCCTGGGACAGATTAAGCTGTGGGAGGCCCAGGTGGAGGAGGTAGATAGGTCAAGAGATTCAGATGATGACCTAAAGGCATGTGGGCGGGGCTTACAGGCGGCATCTTTTACCATCGCCATCCACCCACAAGAGCAAGGGCCGACCTACCTGCTCATCGAGTCCCACCACGAAAAGGACTCGTGGCTGTACCATCTGTCCGTGGCAGCGGGCACCACCGTGGGTAAAGTCGGCACTGAGTTTGAACAACTGGTGGGAAAACTCTTCCAACTGGACGGAGATCCAAACTCTCAGATCTGGAGACATCCCATGTTGTGTTTCAGTAAGGAAGCTCTGTTGTCTCCTCTCACCACCCTGCCTTCACAAGCTCTGCAGACAGAGGCCGTTAAACTCTttaagACTTGTCAGCTTTTCATCAACGTAGCCATTGACGCTCCGGCCATCGACTACCATGTCTCACTGGCCCAGAGTGCTTTGCAGGTGTGTCTGGCCCACCCAGAGCTCCAGAATGAGTTCTTCTGCCAGCTCATTAAACAGACCCGCAGGAGGCAGCCACACGGCCATCCAGGACCGCTGCAGGGTTGGCAGTTTCTAGCCTTGTGTGTCGGACTGTTTCTGCCCCAGCACCCGTTCCTCTGGCTGCTCCAGGTTCACCTCAAAAGACACGGAGACTCCAGGACTGAGGTGGGTAAGTATGCCATCTACTGCCAGCGCTCCATGGAGCGGACCCAGCAGAAGGGCGAGAGGCATGCCAGGCCGTCCCGTATGGAGATACTGTCGATCCTGCTGAGGAATCCCTATCATCACTCTCTGCCATTCAGCGTCCCTGTTCACTTCCTCAATAACACCTACCAGGTGGTGAGCTTCGATGCTTCGACCACAGTGGACGAGTTCCAGTGTCGCCTCAACCAGGACACCGGCATAAGGAAAACAGGGCTATCTGGTTTCAGCTTGTACACTGATGACCCTACTGGAAGAGAGCTGGAACACTGCCTGCAAGGAGGCATCAAGATTTGTGACATTATCTCCAAATGGGAGCAAGCCTCTAAGGAGCAGCACACGGGCAAGTCTGAAAGCACCAGGACTGTCCGCCTCACCTACAAGAACAGGCTGTACTTCTCACTCCAGGTCAGGGGGGAGTCGGAGAGGGAGAGGTTGCTGCTGGCTTATCAGACAAATGAGGCCATTGTAGCGGGACACTTCCCTGTCAACAAGGAACTGGCTCTGGAAATGGCTGCCCTGCTGGCCCAGGTGGAGTTTGGGGACTTTGAGCGTCCCTTCTCAGCTCCTGGATCAGCCCAGACCAAGTCTAACCAAACCCTGAAACAGGTCCTGGACAGATTTTACCCAAAACATTACCGCAGGACCACGTCTGAGGAGCAGCTCAGACAACTGTTGCTGCGCCTCTCTGCCCGCTGGGCCTCCCTCAGGGGTCGAAGTTCCCCCGAGTGTGTCAGGATCTACCTGACCGTTGCCAGGAAGTGGCCTTTCTTTGGAGCCAAATTATTTGAAGCagagTCCATCACGCCCTCTCCAGAGCAGGGTGCACGTGTTTGGCTGGCAGTGCATGAAGATGGTATTGGCGTTCTGGAAAACAACTCTGTTAAGCCGCTGGCGTCCCACCCGTACAAGAGCCTGATGACGTTCGGAGGCTGCAAGCAGGACTTCATGCTGGTTGTGGGGCAGAGCATCGGGGCCAACGCCAGCAAAGACAAACCTACAGAGAAACATCTGTTTGCTATGGACGCCTCCAAGATAAGGGAGATCACCCTCCTCGTCTCCAGTTACATCAACAGCGCTCATCAGCAGAAGGCCGCCGCCCACCACCTGTCTGCCCCGGCTCTGATGGTGGCCCAGCCCATCGGTCTGAAgggcagagatctgaggagcaagtCCCCACCGGCACTGGGACGCCCCAGCAAGACCCCCACGCTGCTGTGACGGCGCAAACCTATCCCATCCATGATCTCGCTGAGGAACAGTCACTTCGCTgagctgccttttttttttttttttaccttgtttGAATTTGAAAATGAAGGATTTATTCACAGCTGCACAAGGCCTGAATTCCACTGGCACACAGCTCTTCCCTTCTTATCAGTGTGATCCTGTAGATGTGTCTCTTTGGGCCAGATTTCTTTCTTGTGTGGGGAATGGTCACCTCTCTGCCTACTGGAAGTGACGTGAAGTATTGTGTTCCCTAAACCATGGTTGCTCCATCCACTTGAGTTTGGACTCCTTTTCATATCTGTTTGGTATAATTTGATATCACAGACGAGCCGAGGTTGCAGCAGTTTACCGCTATGATCATACGGGAGTTCTAGGAGTTGGTGTCCTTTCATTTTAAGCATTTGAACTCCTGAAAGGTGACCTACTAGTGCATTCCTCAGAGAACATAATGGAACTGGAGCAGTGAGCTGGTACACAGGTGTCCTCAGAGGCTTTGCGTAACATTCTGCATATTTGACATATATTGGTCTACCTGATGAATGTGTCGCCTTTGTTTTAGGTCAGCCTCTAAAGAGAAGTCAACACTATTTATTGACAGACTGAGGTAGTGTTTTAAAGTCTGAAATTATCCATCTGTGCTGTGTGgtgcatttctttttcttttctttttttatttttttatttaaaggtgtTCTTTGATGTAAACTTTTGTGTTCCTgtcttaaccctcgtgttgtcctcggttcaaatttgacccgttttcaaagtttctatgtaaaaaatttgtgtttctttcaaccaaattgccccaaaaaataCCACCGATGGTTCCATACACGAAACAGGCTGTGATTATGCATCAACATATACGTTCTCCTGATCGTAACTATTAgccaaaataattcataatatctGGGGGGGTTTAAAtcagaaattaggtataatttaatataaatgaggtttatttaCCATGAATTCAAAAAAGCGttgaagaaagtgacaaaaccaGTTCATTTTCcagaaataagtgtaaaactatagTGGTAGGTAGgtagttggaatgaagttggctgAGAAGATCTAACACCGAATTGGGTGATCATTTATACTTTATGCTTCAGGAACAGGCAAAACAGAcatggaggacaacacaagggttcaaAAAGAATGCACAATTTAGAAAAGGCAATGTCACCTTGTTAAGGAGggtatttttgtatctttttttctgtcctccCGTAAGGCCCAAAAACTCTACCAGGAATTAAAACCCTTACAGTGTTGGATATCGTTATTTAATGAAGGATACTAAACAAAAATGATGAAAGCATAGGACAAGACTGCAGCTGAAGAAAAATGTTAATgtcattgtatgtgtgtgtgtgtgagtgtgtatttgcAATGCAACAGATGTGATTGGTAAGACCGTAGAGTGGGTGAGTCGGTTGCGTGGGGAAAGGTTTCTAGTTTATAAAAGGACGCCAGTTTGGACCCTGTGTGCTCTTAGTTACTGAGTAGCCAGGAGAGAGGTGAAACTGTAATCATGCACAAATACTTTAAGTCTTCCTGGTGGAGTGCACAACTAAAATCGGGCGAGATGCCTCCGCTCAGTATTTCACATGACGTCATTTAGAGAAGTAACACAGGGTGCAGGTTGATTTTTGAGGAAGATGGTCAGAGGGGATCTGATAAGGGAACAGGATGGCGAAAATATGTTGCGGTTGCTCTGGTCACAGAGAAATggtgtttctctgttctgtcaCCTAGCGTGACACAGAATATGATGGTATCTCAAAGAAGCAATCTTCCTCTTCTCTAATCCAAAAGATAAACTGGAAATCagaacttgttttgttttgttttttaatgtatgGTACAAAGCCAAGGTAAGGTAAATAGCTGATTTTCCCCTCCCAGTATTATCTGAAGCCTGTGAGTATTGTCAGGTATTCTATTTATTTGTCATAAAATAATCATCCTTGGAATTATTGTGCATTTCTCATGCTTGAATAAACTAAAACGGCAAACTA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K24020 PLEKHH; pleckstrin homology domain-containing family H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267441 lncRNA upstream 103238 26291118 ~ 26311286 (+) True G196967
XR_005637135.1 lncRNA upstream 284993 26122891 ~ 26129531 (+) True LOC120548056
TU267403 lncRNA upstream 296884 26117101 ~ 26117640 (+) True G196935
XR_005637134.1 lncRNA upstream 303349 26106533 ~ 26111175 (+) True LOC120548055
TU267388 lncRNA upstream 313502 26100492 ~ 26101022 (+) True G196921
TU267508 lncRNA downstream 56305 26533032 ~ 26533234 (+) True G197027
TU267510 lncRNA downstream 61754 26538481 ~ 26539273 (+) False stpg4
TU267513 lncRNA downstream 63117 26539844 ~ 26540135 (+) True G197029
TU267520 lncRNA downstream 147908 26624635 ~ 26627702 (+) True G197035
TU267521 lncRNA downstream 147908 26624635 ~ 26626781 (+) False G197035
XM_039783140.1 mRNA upstream 434087 25977457 ~ 25980437 (+) True hcar1-3
XM_039784661.1 mRNA upstream 445008 25962355 ~ 25969516 (+) True haao
XM_039783523.1 mRNA upstream 526450 25860831 ~ 25888074 (+) True xpo1b
XM_039783071.1 mRNA downstream 18781 26495508 ~ 26521577 (+) True si:ch73-105b23.6
XM_039784131.1 mRNA downstream 51056 26527783 ~ 26531726 (+) True calm2a
XM_039783202.1 mRNA downstream 58557 26535284 ~ 26548760 (+) True stpg4
XM_039784276.1 mRNA downstream 142690 26619417 ~ 26622570 (+) True mcfd2
XM_039784275.1 mRNA downstream 142695 26619422 ~ 26622570 (+) False mcfd2
unassigned_transcript_1122 other upstream 431686 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 589847 25817251 ~ 25824677 (+) False LOC120548053
TU267128 other upstream 793849 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 1403763 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1845357 24564550 ~ 24569167 (+) True G196439
TU267544 other downstream 186432 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 249032 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 449691 26926418 ~ 27109140 (+) False LOC120547882
XR_005637159.1 other downstream 2635961 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 2636155 29112882 ~ 29114881 (+) False LOC120548242

Expression Profile