RNA id: XM_039784335.1


Basic Information

Item Value
RNA id XM_039784335.1
length 2957
RNA type mRNA
GC content 0.41
exon number 10
gene id dennd10
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25605466 ~ 25610518 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGGTTGTCTTGCAGCGTGTCTCCTCCCGCTCCTGTCCCGGAAGAAGGAAGAGATTTCGCACAGGGAAAGAGAGAAGTCTGTTGACAGCAGAAATCCCACCCAGGCCACTGATAAGTTTCAACACATTGTACTTTCTTATTGAATCTGCACAGCATCGCGTTCTGTTATTTGGACGTAGCAGGAGCAATCAAGGTATGGAATATGGCAGCAACTGAAACGCAGCTTATGTTAAGCGTCGGATTAATAGAGAAAGATGTGAATGGAGACACACTGTGGGTATGGTGCTATCCCTCTGTGGGCTCAGACCTGAGGCAAGTCCTGCTCAGCAAGTGCTGTCTGACACAGGACAGCCGGGATTTCCACACCTTTGTGTTTGGTCAGTTCTGTCGCATCTGGTACTACATTACCACAGTGGAGGTGCAGGAACCTACAGCACTAAACAAGGTCACTCATTTTTCAATAGTTGTTACAGCAAAAGACTTCAACCCTGAGAAGTATGCTGCACTTAGTAGAATACTCTGCAGGATGTACACCAAACATGGCAGTCCAGTGAAGATGATGGAGGCTTATGTCACCGTGCTCACCAAAGGAATTTGCCAGAGTGATGAAAACGGCTCATTTCTAATTAAGGATTACGATGTTCGGAAAGCGTACTTGGCTGGTTCAGTTAAAGATGTTGTGTCTCAGTTTGGTATGGAGACAATCATCCTGTATACCGCTCTCATGCTGAAGAAGAGGATCGTTGTCCATCACCCTCGGATTGAAGCGTTGTTGGAGTTTACAAGAGTTCTGCCGACTCTGACGTGGCACAGGAAAGACTGGTCCATCCTGCACCCGTATGTGCACCTGACTGATGCTGAGCTAGAGGATCTCAAGAAATGCCCTGGATATGTAGCAGGATTTGTAGATCCGGAAGTAAGCAACAGATCAGACTTGTTTGATGTGTACGTGAACCTCCCAGACAGTGTCATCACAGTATCCCAGAGTGCCAAAGAGGCCATGGCTATGGGGAAGTTGCACAAGGACATCGGCCACCTTATTGTCCAGTCTGCAGAGGATGCTGAGAGATCAGATAGTCAGGTCATTAAGGATATTTCTGTCAAGACTAAAGAGATCCTTGCCAACTTGGTGGCCCTGGCTGATGAGTGCGAAGACTCTAAAATCACATTGGAAGGTTTAAAGCAGCATCATTTCCCTCCGGCGACGGAGAACTTCCTCTTTCATTTGGCAGCTGCCGAGCAGCTCTTACGGATATAGACCTGTTCTCAGACACCGTGCTGCAGGATGACGTTACTGTCAGCAGCATGCTGTTCTGTTTGTTGGGATGATTACTGTTGTCTGAAAGGCTTCTGCACACGCTCACTGTTACCATTAGAGTGTGCACAAGCCAATTTTCTTCTCACAGTAATCTTCACGTGAGGTAGGAGGGTGTCCCCAGCACTGATATGTGACATAAGCAGTACCAGGATGTTTTACATTATAGCGTGAAAGGCTAGCCATAGGCTTGGctatgtaagggataatgtagagcgagagGGCCATTATTGCAAAGTAAAGCCCGACCGGGTGATGCAGGACCCAACGTGAAAGGGTTAAAATTGCAAAAGTTGACCCGCTCACTCAACATTATCCCACTTATCACAAGGCTACTAATTTTAACCCACAATTtagattttaaaatgatttttattgatttaaaaatggtccTCCAGAGTCTATGATCTCGACTGCGTCTATAGCAGCCGTCTGCTATTCAGAAATGACAGACTGTAGAAtggccaatcagaattgagtattcaTTGCCAAAAACATTGTTATTTCTTAATactaatatttattataatatatctTATTCCTTTGAGGTCCACATTtgtcaaaattaaaaacacatgtaCTATTGCACAGGTTGACATATTCCTTCATTACCACGAACATGGGAACTGTAGTTCATTTTGAGTCAGTTCTGCTGCCATAAATACTCAATCCAGTTCCAAATGTGTATTCatctgcagctgaaaatagtctaCAAAGAAATGTACCATTCACTCCTATTTTAgtaatttttgttaaaaaatgacagtgcccagctgtttgaAGAAATGGCCTTGTCTTTAATGAAAGTATATATTTGTGGCTTGTTTTTAAAGACTTGAGTCTTCAGTAGTAAGCAGTGGGCTTTGAGCGTATTCAAAGACGGACTAACTTGCTGTTGATTTTGGTCTTTTTATGGGATTTggtgacaataagaaaaatataagaCTATTCTAGCCTCGTCCTTTAACGTCAGTAGTTATGGACAATGGGGAGCTACAGTTTTTGGAGACAAATAAGCTGGTACTTTTCTCAGCTGGTACATCTGATGGTGCTTTCCACAGGTTAGCTCCCACTCCACATACATACATCACAAATCTTATTCCTGGTTGGAAATATTGGGTACTCGTGaagagtttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacatatacatactcCATTGTAACAAGCCGTTATTGAGTTTGTTGATAGAAACTCCATTGTACGTGGTTATCAGATCACAACTGCAATAGACATTGCACAACGTGTGGATTtatttacgttttttttttagcaatgtcACATTTTGTATTTTACTAATGACTTAAATACAAGCaaactgtgttgtgttgtgcgaGACTTTTTCAAACAGTGTTTTATAAAAGTGATGGAAATAGAGCTGTTCCTCATTAATCTGCAACTGATCAAAGGACAGTTGTTGCTTCCACGTCCACATAGATTTTTATTGCATTATGTCTTACTGTTATTACTGATGTATCATTAGCGCTGTTGTTTTACAGGTGAGTGCATTTTCAACCACATTGccaaaaggatgttttttttttttgtgcctcaGTATTTCAGTTAAGACACAGAGTgcaatacatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637158.1 lncRNA upstream 20889 25501529 ~ 25584577 (+) True LOC120548233
TU267083 lncRNA upstream 106186 25497004 ~ 25499280 (+) False G196696
TU267082 lncRNA upstream 106316 25496668 ~ 25499150 (+) True G196696
TU267084 lncRNA upstream 109961 25494373 ~ 25495505 (+) False LOC120548229
TU267076 lncRNA upstream 171570 25427643 ~ 25433896 (+) True G196690
TU267208 lncRNA downstream 169008 25779526 ~ 25794408 (+) True G196782
TU267222 lncRNA downstream 201697 25812215 ~ 25812441 (+) True G196788
TU267300 lncRNA downstream 294202 25904720 ~ 25907869 (+) True G196841
TU267292 lncRNA downstream 301243 25911761 ~ 25939959 (+) True G196836
TU267365 lncRNA downstream 379950 25990468 ~ 25992621 (+) True G196898
XM_039784330.1 mRNA upstream 110123 25481831 ~ 25495343 (+) True LOC120548229
XM_039784510.1 mRNA upstream 174557 25413994 ~ 25430909 (+) False fam204a
XM_039784338.1 mRNA downstream 3939 25614457 ~ 25620649 (+) False prdx3
XM_039784288.1 mRNA downstream 52295 25662813 ~ 25674906 (+) False zgc:110045
XM_039784286.1 mRNA downstream 52297 25662815 ~ 25674906 (+) True zgc:110045
XM_039784289.1 mRNA downstream 52298 25662816 ~ 25674906 (+) False zgc:110045
XM_039784287.1 mRNA downstream 52299 25662817 ~ 25674906 (+) False zgc:110045
TU266801 other upstream 594705 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1036299 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 1237867 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1999892 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2935999 22647914 ~ 22669467 (+) False tasp1
TU267128 other downstream 2889 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 206733 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 372227 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1052641 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1115241 26725759 ~ 26735787 (+) False tmem254

Expression Profile