RNA id: XM_039784346.1


Basic Information

Item Value
RNA id XM_039784346.1
length 4079
RNA type mRNA
GC content 0.44
exon number 7
gene id ttl
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25769647 ~ 25778043 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGACAGTGGATGACAGCGACTGCTGCTGAGAGCTTCAGATCATACGCCGCCGTGGGAAAATAAGCTGcgtttgtgtagctaactaacgttaggtAGTTAGTTCACGTTTCGTACTAtttattattaaagtatttgtCTTTGAGGAGAGATCGCAGGAAAAGTTTCCTGAATAGCTGTTCATAGCGGTAGCAGCCCGTTAGCTAAAGCTAAACCGGAGACGGGATCTTAATTAATCCAGACGGGACCAACCCCAGGAGCCGGGTAGCAGCAGTCAGTCACACCCTTGTCTGGGGTTAGTGAAGGAACCCTGTATGCGCAGAAATCTTAAATTTCTTCCCGTCACATGTTACaatggtttttttttacaaataaatgttAGCCTCAGACTAAATTTGGAGCTTCGGACCAATATTGTGAGTTAACTGGGAAGTGTGGACTGGATATGACTGACTCATCATCATGGCACGGACAGAGGAGATAACCCTGAACAGTCCGTCTGCTGCAGTGCCAACCAGACAGTCTCGTAACTAGCTAGACAACTGAGTTACACATTCGATCGTTTCTATTATATATTTCACTTCGCGGTGAACGTGGCATTATGAATACCCCGATGTACACGTTTGTTTCCCGTGACGACAACAGCACGGTTTATGCAGAAGTTTCCAAAATCCTCCTCTCAACCGGACAATGGAAGAGGCTGAAAAAAGACAATCCCAGATTCAACTTAATGCTTGGGGAACGGAACAGACTGCCCTTTGGACGTCTggGCCACGAACCAGGACTGGTTCAGCTGGTGAATTACTACAGAGGAGCAGACAAGCTGTGCAGGAAGGCGTCATTGGTCAAGCTAATAAAGACCAGCCCGGAGCTGTCTGACTCCAGTAACTGGTTTCCAGAATCCTACATCATCTATCCTACCAACCTCAACACCCCTGTTGCTCCAGCTACAAATGGCATTAGCCATCTGAAGAACAATCCCAAGACGGATGAGCGAGAAGTTTTCTTGGCCTCCTATCACTCTAAAAAAGAAAGTGGGGAGGGCACAGTGTGGATAGCCAAGTCTTCTGCCGGAGCTAAGGGTGCTGGTATTTTGATATCCCATGATGCTAATCAGCTGCTGGAGTACATTGATAATCAGGGACAGGTTCATGTTATTCAGAAGTACCTGGAGAAACCTCTGCTTCTGGAGCCGGGACATCGGAAGTTTGACATCAGGAGCTGGGTGCTAGTGGACCATCACTACAACATCTATTTATACCGGGAGGGTGTGCTGCGGACGTCCTCAGAGCCCTACAACAGCTCTGACCTGCAGGACATGACCAGCCACCTGACCAACCACTGCATCCAGAAGGAGCACTCCCAGAACTACGGCCGATACGAGGAGGGGAACGAGATCTTCTTTGATGAGTTCAGGCTGTACCTGCTGAACACTCACAATGTCACCCTGGAGACCAACATATTACCTCAGATCAAGCACATCATAAAGAGCTGTCTGACATGTATCGAGCCGACAATCAGCACCAAGCACCTGTCCTACCAGAGCTTCCAACTATTTGGATTCGATTTCATGGTGGACGAGAGCTTCAAAGTCTGGCTCATTGAGATCAATGGAGCTCCAGCCTGTGCACAGAAACTATATCCAGAGCTGTGTCAAGGTATCGTGGACGTGGCCGTTTCCAGCGTCTTCACCATGAACAGCGGCGGTGACTGCCCATCTGCTTCCTCTTCACCTTATTCGTCCTCCCCATCCTCCACGTTCACCACCAACTCCTGCTCCTCTCCCAAACTGAGAGGGCCTCTTCACGTGGGCCCTTTCACTCGGCTGTAAGCACACGCGAATATTCCCCTCGTCTCCTCCGTACACGCTTCTTTCATGCTCTGTCCTCACTCCTCAACTCTAGCTGAGAAGCAGCACATGGCAGCGAGCCCAGCCTTTAATTGTACCTTGCCTGTCACGCCTGAAGGGAGTCTTTCTTTCTATGGAGAGCACTGAGCGCCAGAAATGATCTCTGCTCTCCCGGTTATGCATATTATAACGAATGTGAGGATGGGGACGAACGGATCAACAAACTTTTCCGGGAGTTTCTGAGTGAGGACAGACGCCCTTCCATCTCAGTCCCACCACCAGTTTCTCCACAAGCAGATTAATGGAGGACTGAAGGATGCAGAGACGCTCAAACTGAGACTGTAGTGCCTTACATTTCCAGCCACGCTCCCTTAAAAAAAGACTGCCAGTTAGCTTGCTCTGTCACTGTGGCTTGTACTTGTTCTATACGCCTTTGCACTGTTGCTCAGTAAAGTCAATGGGGTCATGGTCAGTCGGCAAGAATTAGCTTAAAAACGTATTACTTGACATGTGAGATCTTAGTGAATTTGTGTAAATTGGAATGCTATTTATCTCATGAGacacatttttatcttttttttgttttatttgcagcTTACCTGCAGCTATCTGTGCCCCTTAGTTTCATAGGAATGCTAAAAGCGATCAAGAGTTGTTAAAACTTACAAAGACTTGTATACTAACCCGATGTGTCTTTATGAGCCACACATTCAAGACGTCAAGGTTTGCCTTGAAAATCAACATTCCTCTAAACTTAGCCATGTGGACGCCATATTTAATTTGCGTTTAGGACAGCAACAAGGAGGCCGTCCTTCATCTGGTAAACCAAGGTTTAAGTCCGTCCTAACAAGTGTCCCTGACCCCTGACCTCTCTACAGCAGAGAGGAAAGACAAGTATTAGCCTGCAGTATTCTGTTCTCAACTCATTCTTCTACAAAATAGTCCAGCTGAAGACTATTTGGGCATTTTATTTGTCATCTGAAGAGAGCATGTTTGCGTGAAAGCATGTAGTAGAATGCATCCTCATACAAGCCCCCACAGCACTTGTTTGTCCCAGTTTGTAGAGCTGCCCTAATGACTGTTTTATTTCTGACGTATGAAAAGCTAGACTTGTCATTGTAAAGTGTCTTCAACAAGTGTGTGGATTATGTTTTTGAACTGTTATGTAATGAAAGTAGTAGTAGGTTGTGCAAAGTGTGTAAAAGGCCCCATGAAACGAAACTGGCAGGACACAAGAGACATAACAGAGCTgatggagacaaaaaaaaatatttcatacTTTTTACACTGCGCTTGTATAACATTGTGTGTCAAATGTGTGTTATTACCACAGAAAAAGTCAGCGGACAGCCAGCGGCTGCAaggaagacacagacacacgtctTCATCCCGTCACTGCCTCTTCTTCGGTTACTGCTTGTGTTTGATCATGTCACTGTATGAACCAATTTgtactgttctttttttttttttctatcagaGTTGCATTTCAcgactgttttttgttttgtttcatggGGTCCTTGAAAGATTTcagttcttttcttttaatgaaTCTCTCTGTGAATAGATAAGACCTTTAGAGGGGTAACTCATCTATTTTATGTTACAGTTTGGTAGAAAGAGGTGTTTAGTTTTTCCTCAGACATGAAACTTTAAATTAGCTAAAGAAATGTGCTCGTTGGGTAGTCGATTCAACTGTTGTGTCTCCAGGAgctcattttaaacaaaataagtCATTCTAGGAGTTTTAGTAGGCGTGTCTCTCGTGATGTTAGAGTCCCCGCTGCTCCTCTCTTCTAACCTCGATTCAAACGTGTGAGGCTTTACATCCCATGTTGTGAGTAACTTAAGTTAAGGGACACCATCGGAACATTATTGTTTTAAAtcgctgtgtatttgtgtttacaAGATGACTCTGGGAAATGAAGGATATGAAGATGGTCAGACAGATGGAATAGTTACAGAGCAGGTTACACTGACATGAAACTAAGAACATGACGAATCCATTTCTGTGATGTTTTGCAGAGCCCTGATGTAGCCGAAATGCTATTTTTGAAAGTTTGGAAAAATGATGTAtgtcatggttgtgttgacaaaTGGGTTACACGTGTTTGCTGATTTTTGAAGTATCAGAAGCAAACTGTCAGTATTGGAATTCAATTTGTAGGGAAATGTCTTTCTGTCAAAGGGAAAGGTGCCTTAGGGGGAATTGcatattgataaaaaaaa

Function

GO: NA

KEGG:

id description
K06047 TTL; tubulin---tyrosine ligase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267118 lncRNA upstream 94743 25594496 ~ 25674904 (+) False zgc:110045
XR_005637158.1 lncRNA upstream 185070 25501529 ~ 25584577 (+) True LOC120548233
TU267083 lncRNA upstream 270367 25497004 ~ 25499280 (+) False G196696
TU267082 lncRNA upstream 270497 25496668 ~ 25499150 (+) True G196696
TU267084 lncRNA upstream 274142 25494373 ~ 25495505 (+) False LOC120548229
TU267208 lncRNA downstream 1483 25779526 ~ 25794408 (+) True G196782
TU267222 lncRNA downstream 34172 25812215 ~ 25812441 (+) True G196788
TU267300 lncRNA downstream 126677 25904720 ~ 25907869 (+) True G196841
TU267292 lncRNA downstream 133718 25911761 ~ 25939959 (+) True G196836
TU267365 lncRNA downstream 212425 25990468 ~ 25992621 (+) True G196898
XM_039784569.1 mRNA upstream 11329 25740125 ~ 25758318 (+) False ikzf1
XM_039784566.1 mRNA upstream 11329 25740191 ~ 25758318 (+) False ikzf1
XM_039784565.1 mRNA upstream 11329 25740192 ~ 25758318 (+) False ikzf1
XM_039784564.1 mRNA upstream 11329 25740193 ~ 25758318 (+) True ikzf1
XM_039784567.1 mRNA upstream 11329 25740199 ~ 25758318 (+) False ikzf1
XM_039784000.1 mRNA downstream 39208 25817251 ~ 25826429 (+) True LOC120548053
XM_039783523.1 mRNA downstream 82788 25860831 ~ 25888074 (+) True xpo1b
XM_039783524.1 mRNA downstream 84756 25862799 ~ 25887388 (+) False xpo1b
XM_039783525.1 mRNA downstream 85252 25863295 ~ 25888074 (+) False xpo1b
XM_039783526.1 mRNA downstream 87006 25865049 ~ 25888074 (+) False xpo1b
TU267128 other upstream 148972 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 758886 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1200480 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 1402048 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 2164073 23562283 ~ 23605574 (+) False disc1
XR_005637133.1 other downstream 39208 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 204702 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 885116 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 947716 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 1148375 26926418 ~ 27109140 (+) False LOC120547882

Expression Profile