RNA id: XM_039784347.1


Basic Information

Item Value
RNA id XM_039784347.1
length 1025
RNA type mRNA
GC content 0.57
exon number 3
gene id vox
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 27886243 ~ 27887609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAGCCATTAACCCCTAATCATCGGGATCGATCAGGCGTTAACAAGGGCCTCTACATATgcaaatgggggaaaaaaaccaaaGGCCAGGGCGCTATAAAAGACGACCCTGGCCAGAGGCTGctaccacacactccctctGACATCTGCTGGATTTACAGGTCACCGAGTAGCACTGCGAACATGGTGAAATACTTTTCTGTGGACTGGCTGGCCCAGAGCCATCAGCACACCGCGCTGACCGAGGACGAACACGGAGCTGGCGTGGATACTGCGCCGACCTGCAGACCTCACATTCCCTGCATGGTGCAGCCGCGCCCGCCGGCTTTTGGCAGGGGTTACCTGCAGCCCAAACCCAAAGCATCCAAGCCCGATGAACACATGGAGCcagcggagagagagagcgggcaGGACTCCAGCCTGATGTGCTCCCCTTTCCATCCGACACGCTGCGCATCGCCAATTTCAGAAATCAGCGGCTATTCCTCCGGGTATGAGAGCGAGGCGGCTTCCTCTGAGGGAAGCGACGTGGAGAAGGACGGAGCGCAGCGCCGTGTGCGCACCAAGTTTACCCCCGAGCAGATCGGCAAGCTGGAAAAGATCTTCACCAAGCACAAATACCTGGATGCTGGAGAGAGAGTGAAGGCAGCGCAGAAACTGAAGCTCACAGAAACTCAGGTGAGGACCTGGTTCCAGAACAGGAGGATGAAGTTGAAACGGGAGGTGCAGGACTACCTTGCTCCCCACATCCAACCGCTGATGTTCCAGCCTCTGCCCCCGGTGCAGTATCACCGCGTGGCCGGACAGCGACCCCACTACCCCGCCACCGGCCGGGCCTTTTACCCGCTGCAAGTAGTCCCGCAGCTGgtgatgcagcagcagcagcagcagcagatgccCCCTCACCACCATCCTCATGTCATGATCCGCAGCCCACACTTCTACTGAAGAACTGTCAACCAGAGACTTCTCCCACTGAAACACTTAAGAGTCCAAACAAGTGCAATCCAGAGTGCTTTTATTTGAT

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24877 VENTX; homeobox protein VENTX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267715 lncRNA upstream 281418 27569913 ~ 27604825 (+) False LOC120548047
TU267703 lncRNA upstream 374656 27510648 ~ 27511587 (+) False LOC120548261
TU267683 lncRNA upstream 516312 27369236 ~ 27369931 (+) True G197158
TU267671 lncRNA upstream 584875 27300110 ~ 27301368 (+) True G197146
TU267667 lncRNA upstream 586249 27299168 ~ 27299994 (+) True G197143
TU267770 lncRNA downstream 116968 28004577 ~ 28006159 (+) True G197237
TU267805 lncRNA downstream 363149 28250758 ~ 28251552 (+) True G197270
TU267815 lncRNA downstream 412555 28300164 ~ 28302330 (+) False ccnj
XR_005637196.1 lncRNA downstream 521861 28409470 ~ 28411483 (+) True LOC120548567
TU267828 lncRNA downstream 561971 28449580 ~ 28452009 (+) False G197287
XM_039784780.1 mRNA upstream 7675 27808304 ~ 27878568 (+) True LOC120548504
XM_039783993.1 mRNA upstream 105202 27554928 ~ 27781041 (+) False LOC120548047
XM_039783992.1 mRNA upstream 105202 27554929 ~ 27781041 (+) True LOC120548047
XM_039784380.1 mRNA upstream 374651 27451950 ~ 27511592 (+) True LOC120548261
XM_039784381.1 mRNA upstream 374651 27478506 ~ 27511592 (+) False LOC120548261
XM_039784781.1 mRNA downstream 3841 27891450 ~ 27900204 (+) True vent
XM_039784137.1 mRNA downstream 344186 28231795 ~ 28275999 (+) False blnk
XM_039784138.1 mRNA downstream 344187 28231796 ~ 28275999 (+) False blnk
XM_039784139.1 mRNA downstream 367511 28255120 ~ 28275999 (+) True blnk
XM_039782996.1 mRNA downstream 406596 28294205 ~ 28302333 (+) True ccnj
XR_005637113.1 other upstream 777103 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 1150456 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 1222458 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 1903405 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 2061566 25817251 ~ 25824677 (+) False LOC120548053
XR_005637159.1 other downstream 1225079 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 1225273 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 1460816 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 1648910 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 1707683 29595292 ~ 29596825 (+) False LOC120547718

Expression Profile