RNA id: XM_039784504.1


Basic Information

Item Value
RNA id XM_039784504.1
length 2975
RNA type mRNA
GC content 0.48
exon number 1
gene id map10
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 23762408 ~ 23765382 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAGCTGTTTCCATGGAGCCGATAGAAGCTGGATTAGCTTGttgagttttttgttgttgtggtcacGCGGCTTTCGGGATGTCAGGACGACAAAATAGCGATCATTTGGACACTCTGTTTTCATTCGAGCTTCTGGTGGAATCTATCCGAATCGATAAAGACAGTCAACTTTCCGACGAGCTGGCTCTAGGAGTACGACTGCTGGATTTCCCGACGCTGCTCATTTATCAGCCTCAACAGGGCAGTGGTGGCATTACACAACAAGATCAGCATGGGAAGGATCAGCAGGGAGAACAATACGCCTTCAACAGGGGGaagtcttgtttcttcaaaatgaACCTGAACTCACTGCATGCCCATCTGTCTAACACCCCTCTCTATGCTATGGTGTTGGATGTGAAAGAAGAGATGCCCAAATTAGTTGGTACCTCACTCGTCTCACTGGCGAAAGTGGTGGACAGAATCAGGCAGGATGTGACTGAACGTGGCGTTTCTGCTCCCTCGTCCCATGGCCAGAGGGGTGTTGTTGATGTATGCGACCTCACGGGGCAGAAAACTGGATCGATTTCCCTGAGTTACAAACTGCTCAGTCTGGGAGCTAGTTTACTGCCACATGTGACAGAAAGGAGGGGTCTTGAAAGCACCAGTGTACACCGAGGACAACGTGTACGACAACACCTCACAGAATCACGGCCCCTTGACTGTGGGAGTGTCTGTTCACCCGCACCGGACGAGCCTGGTGTTAGCAGAAACATTCCAAACAACAAATCATCGAATGAGAACACCTTGGTGAATGAGGATCAACAGGACAACGGTGTTTGTGTTGCTGCGCAGACTGACCGCAAGCCAAGAAGCCAAATGCCTCAGACACTCCGAGAAAGGGAAAACAATGTTGAAGAAGATTCAGCTATATTTTGCCCGCCACATCTCTTCTACAATAATTGTGCAGAGGAAAAAAGCAAAACTAAAGGCGGGGAATGCAAATTACTGAATCTAGTCTCGGAGGCTTTTACGTTCGAAGACACAGAGGAAGAGACAGGTGAAAATACAACTGAAGGTACGGGTTCTCCAGCGCTGGACCAGAGCGCTAGACATGATGTAAATACGTCAAGGAACCAAGAAACAAGTGGGGGGACTCAAAATGTCCTCGGGGAATCCTTACGACAGTTGCCGCTACTGAACGCTCTTCTTGTTGAGTTGGCGCAGTTGAATGGCCAGAACCCACACCAGCCCTTGTCTGTTCATCCCAATCTATCTTGGATTTACAGGCCCGCTTCCACGGAGCCTTCAGCTGGGAATTTGAACACACCACGAGAGGCGCAAACAAAATCGCTGAAGAAAACCAGACAGGGGACTAGTCCCCACTTAAAACATTTACATCCCCCCAGATACTGTTCTACACCAGTAGTTAGGCCTGCGTCTGTTAAAGTGAACGACAAACAAGAAGAGGCTTTGATTGAGCGTAAACGCTCCAGTAAAGCTCCTCGGAAGAAGCTTGTATATGGTACAACTAAAACATTCAATCTAAGGCTGAAGCAAATTTCTCCTCTTAAAGTAAAACGGCATGAATGCATGGACTTAATACAGGATGAAACACGGTCAAGGATGGCCAAAGGAAAGGTGATGTCAAGTGATGAGATTGCGAAGTCCAGCAAAAGAAAATCAGTATTAAATCAGAGATCCAGTCTAAATGAGAATGTTGAAACAATGATGCAGAGCGTCACAGTGGGCTCTGCACTACAAGAAACGATTCGCAAACAGAGAACCCCGCATGGGAAAATCCATGGTGAACGAGACCGGGACTCTCCGAGAATTTCAGACAGAGCTTCCCTTTCTGAAAGAGACTTGAAATGTATTCGCATCCCCGGTGTGGCTGGTGACACCGTTTCCCAAAACAAAGACGAAAAGGAGCATCACAGTGAATCCTGTCAAGGCAAATCCCACTGTGAACCTGACAGGCACAGAGAGAACATGGAATCTTCAGGAAGCAGCGGACGCAGCAGCCCCAAATCTTCATTTCCAGACTCCAGCGgggaagaaaaggaggaggcAGACTACGCCGATGACTTTAACAGCCTGGAGCCCAGCGATGCCTACTCCTGCTCCCCTGACCCCGTGAGTAGCCCCGAGCCCTTTAGAGCCAAGACCCCGCGGTCTCCTGTCTGGCCCGAGTCCCGCAACTCTGAAGGTCTGCAGAAGAGAGCGGCCCTCCCTGTGCCCATCAAAGCCCCCAGCTCTCCACAGCGTGCTCTGAGGGGCACGCACATCATCCGACCTCGAACCCACGCCTCGGCGCTCAGCGTCTCCTCCGATGACAGTGACAGAGACGCCGGGTCGGCTTCCTCACAAACCGTACGCTCCAGAAAACAGATGGCAGAGAGTAGTAGAGTGGAAAGGAGCACTGAGAGCGTCATGTCGTCAAGAGGTCAAAGGAGCGGGTCCACCAAGAGCAGCGGTTCTGTTCGAGGATTTTCTGCAGAATCGATATCCTGCTTTGAACCGCAAGAGGTAGAGGAACTGGAGGATGAGCTTGGATCTCTGGATTTCAAAAAGGAGTATCAGCATATCTCTGAGCTAGTGGCCAACAAACTCCCTGGTTACACTATGTAAAGAAACAATAAAGAATACCACATTATGGTAACATCGAGGCTACACTATCTCCCCTGATTAGGTGAAACAGAACAGTAGCTAGTGGTGTTGTACATATCTAGCAAATTTGTGTAAATGTTCCTTTCAGTTATGATGTCTGACAACTTCTTTGAATAAAAACGAGCTTTTTGTGGAAATAATGTGATCGTTTTACATCTTCATCACTCAGTTAATACTAGGCCACTGGACATTTGCATACATTGTTGGACCCGTCTTTTAGTGACCTATAAGAGGATGGGAAATCTCTCTGTGCACGCCTTTTATGCAAATCATTTGATTTAGTAAGCTCTCATTTCCAGTCGAGTTGTCACAAGCTGAAAATCTT

Function

GO:

id name namespace
GO:0004386 helicase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266482 lncRNA upstream 151071 23599208 ~ 23611337 (+) True disc1
TU266377 lncRNA upstream 218570 23543607 ~ 23543838 (+) True G196195
TU266365 lncRNA upstream 229349 23497168 ~ 23533059 (+) True G196184
TU266347 lncRNA upstream 291964 23467294 ~ 23470444 (+) True G196174
TU266309 lncRNA upstream 408067 23353972 ~ 23354341 (+) True G196140
TU266559 lncRNA downstream 53603 23818985 ~ 23821177 (+) False klhdc3
XR_005637177.1 lncRNA downstream 105162 23870544 ~ 23874163 (+) True LOC120548378
XR_005637176.1 lncRNA downstream 105162 23870544 ~ 23873751 (+) False LOC120548378
TU266587 lncRNA downstream 285807 24051189 ~ 24124149 (+) True G196328
TU266586 lncRNA downstream 357559 24122941 ~ 24124149 (+) False G196328
XM_039783581.1 mRNA upstream 151936 23562284 ~ 23610472 (+) False disc1
XM_039783582.1 mRNA upstream 151936 23562284 ~ 23610472 (+) False disc1
XM_039783583.1 mRNA upstream 159825 23562283 ~ 23602583 (+) False disc1
XM_039783543.1 mRNA upstream 204565 23549140 ~ 23557843 (+) True tsnax
XM_039783544.1 mRNA upstream 204565 23549140 ~ 23557843 (+) False tsnax
XM_039784505.1 mRNA downstream 1221 23766603 ~ 23770420 (+) True ntpcr
XM_039784197.1 mRNA downstream 53532 23818914 ~ 23851605 (+) True klhdc3
XM_039783049.1 mRNA downstream 90333 23855715 ~ 23860867 (+) True npas4l
XM_039783051.1 mRNA downstream 90600 23855982 ~ 23860867 (+) False npas4l
XM_039784241.1 mRNA downstream 297373 24062755 ~ 24122075 (+) True zmp:0000000755
XR_005637111.1 other upstream 156834 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 1092941 22647914 ~ 22669467 (+) False tasp1
TU265655 other upstream 2247280 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 2431121 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 3008599 20752773 ~ 20753809 (+) True G195518
XR_005637109.1 other downstream 592544 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 799168 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 1243130 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 1848025 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 2051869 25817251 ~ 25824677 (+) False LOC120548053

Expression Profile