RNA id: XM_039784565.1


Basic Information

Item Value
RNA id XM_039784565.1
length 2112
RNA type mRNA
GC content 0.59
exon number 8
gene id ikzf1
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25740125 ~ 25758318 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAAGTGCCAAGGGCTCGGAGGCTCGACTCCCCGCTGCAGACTCGGCCTGTGGATAAAAGCGAGCAAAATGCCCCAGCCGAGCTCAGAGACATAGTCATGTTGGGCTGGAACGAGGAAGTGCAGTGGAGAGGGGAGGGACTCCGGGCGCAGCTCCATGGGGCCGCCGCGGCGCTGCGACCTTCTGCACATGGAGCCGGGGAGAGTTGGAAGAACTTCATACTGCAAACTCAAGGAATAGCAGAGTACCTGCACCGCATGGAGACAGAGGAGGCCCAGGAAATGGCCCAGATGCCAGGCAGGGACAGCCCCCCTGCCAACGAGGCATCCGAGGAGGCCGAGGAACCAATGGCCGTCCCTGAGGACCTGTCAGCCGGCTCCACCCACCAGCAGAACAACAGAGGGGACAAAGcctgtaacattaaagttgaGGCTCGCAGTGATGAGGAGAATGGGCTGGCCTGTGACATGAATggcgtggaggaggaggagtgcgCGGAAGACTTGCGCGTGATCGATGCCTCGGGGGCCAAGGTGAACGGCTCACAGCCGAGCCCCGAAATCAAGGCCTTCTCCTCGGCTGGCGGTATCCGGCTGCCCAACGGGAAGCTCAAGTGCGATATCTGTGGGATAGTTTGCATTGGCCCCAATGTGTTGATGGTGCACAAGCGGAGCCACACTGGAGAACGTCCTTTCCATTGCAGCCAGTGCGGTGCCTCTTTCACCCAGAAAGGCAACCTGCTGCGTCACATCAAGCTCCACTCAGGGGAGAAACCCTTCAAGTGTCACCTGTGCAGCTACGCCTGTCGCAGGAGGGACGCCCTCTCCGGACATTTACGCACCCACTCGGTTGGAAAACCCCACAAGTGTGCTTACTGTGGGCGGAGTTACAAGCAGCGCAGCTCTCTCGAGGAGCACAAGGAGCGCTGTCACAACTACCTGCAGTGCATGGGGCTGCAGAACAGCATGTACACAGTAAAGGAAGAAAGCAACCAGAATGAGCAGAGGGAAGACTTAACCCAGACGGGATCTGACAGAGCCTTGGTGCTAGACAGACTAGCTAATAATGTAGCTAAGCGTAAGAGCACTATGCCACAGAAGTTTGTGGGTGAGAAACGTCTGTCAGACCTCTCCTACGACGGAGGAGCAGGCGAGCTGATTCAGCCCCACGTCATCGACCAGGCCATCAACAGCGCCATCAGCTACCTGGGGGCCGAGTCGCTCCGGCCTCTGGTGCAGACCTCCCCGGCCTCCTCTTCCGATGTGGGCCTCAGCTCCATGTACCCCCTGCACAAGCAGGCGGGCGAGGGCCACGCGGGAATGGGCCACAACCTGTCGGCCAAAGACAGCGCAGCCGAGAACCTGCTGCTCCTCTCCAACTCCAAGTCCGCGTCCAGCGAGAAGGATGGCTCGCCCAGCCACAGCGGCCAGGACTCCACAGACACCGAGAGCAACAACGAGGATCGTCCCGGCGGGGTGGCTTCCGGCCTCATCTACCTGACCAATCACATCACGTCGGGGGTGAGGAACGGCATGCTCCCTCTGGTgaaggaggagcagcagaggcAGTACGAGGCCATCCGGGCCAGCATAGAGATGGCTTCAGAGGGCTTCAAGGTGATGACAGCAGACGGGGAGCAGGTGAGGGCATACCGGTGCGAACACTGCCGCGTTCTCTTCCTGGACCACGTCATGTACACCATTCACATGGGCTGTCACGGCTTCAGAGACCCCTTCGAGTGCAACCTCTGTGGTCACCGGAGTCAAGACCGATACGAGTTCTCCTCTCACATGACGCGAGGGGAGCATCGCGTCTGAGCCCCCGTACACcggagagaacacacacacatacatacacacacagacacacacacacacacacacacacacagacagacaaataggTGTAGATATGGAAAACATGccgcacacactcactcatgcAGACATGCACTGGAagtaagggactgttcgttatttatttaaggggccacccgAGGAGGGAGAGACCGCTAGCTCACatagtaagagcgttcgcccatgagtcctgcagcggtgcagggtttgaatctgacctgcagccctttgctgcatgtcatcccccatctctctc

Function

GO:

id name namespace
GO:0030183 B cell differentiation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267118 lncRNA upstream 65288 25594496 ~ 25674904 (+) False zgc:110045
XR_005637158.1 lncRNA upstream 155615 25501529 ~ 25584577 (+) True LOC120548233
TU267083 lncRNA upstream 240912 25497004 ~ 25499280 (+) False G196696
TU267082 lncRNA upstream 241042 25496668 ~ 25499150 (+) True G196696
TU267084 lncRNA upstream 244687 25494373 ~ 25495505 (+) False LOC120548229
TU267208 lncRNA downstream 21208 25779526 ~ 25794408 (+) True G196782
TU267222 lncRNA downstream 53897 25812215 ~ 25812441 (+) True G196788
TU267300 lncRNA downstream 146402 25904720 ~ 25907869 (+) True G196841
TU267292 lncRNA downstream 153443 25911761 ~ 25939959 (+) True G196836
TU267365 lncRNA downstream 232150 25990468 ~ 25992621 (+) True G196898
XM_039784775.1 mRNA upstream 5477 25722609 ~ 25734715 (+) True LOC120548498
XM_039783070.1 mRNA upstream 32950 25678195 ~ 25707242 (+) True vwc2
XM_039784286.1 mRNA upstream 65286 25662815 ~ 25674906 (+) True zgc:110045
XM_039784346.1 mRNA downstream 11329 25769647 ~ 25778043 (+) True ttl
XM_039784000.1 mRNA downstream 58933 25817251 ~ 25826429 (+) True LOC120548053
XM_039783523.1 mRNA downstream 102513 25860831 ~ 25888074 (+) True xpo1b
XM_039783524.1 mRNA downstream 104481 25862799 ~ 25887388 (+) False xpo1b
XM_039783525.1 mRNA downstream 104977 25863295 ~ 25888074 (+) False xpo1b
TU267128 other upstream 119517 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 729431 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1171025 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 1372593 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 2134618 23562283 ~ 23605574 (+) False disc1
XR_005637133.1 other downstream 58933 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 224427 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 904841 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 967441 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 1168100 26926418 ~ 27109140 (+) False LOC120547882

Expression Profile