RNA id: XM_039784598.1


Basic Information

Item Value
RNA id XM_039784598.1
length 3796
RNA type mRNA
GC content 0.52
exon number 20
gene id inpp5f
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25198539 ~ 25213504 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAGGAAACTGTCGGTTAACGTTACGAGTGCACGTAGCAGCATCTGGGACATTTTCTCCCCTTTTTATGTGTCTTTGCCTTTACTCCGTGCAGCATGACCGTGGGACGGGCTGCTTCTCCAGTGGAAAGGGAATTTGATTAGCAGTATGCTTATAAGTGGAATAAACACATCCGACACGcatccagctgctgctgctgctgctgctgctagctcgCGAGGTAGCTATCTGCCGTAGTTTACCAGCCTGTGGGGAGCGAGCTAACCGTGGCTAGCCAGTCAGTCGCTCTCCGGCTAGCTACAGTTTTACCTCCAAGGCGTGAGACTTGATAATTACCTGTACCTGGCTACTAGGCCAGCTAGTTACCTGTGTTTGTGTAACGTCAAGGGACAAAATGGAGCTGTTCCAAGCCAAAGACGACTACATTCTCCAGAGCGGGGATCGTGCTCTGTGGTGCAGCCGAAAAGACGGGACCATGACAGTCAGACCTGCAACAGACCTGTTGTTAGCTTGGAATCCAGTGTGTTTGGGCGTGGTAGAAGGTATCATTGGAAAGATACAGCTTCACACAGACCTTCCTCTGGGCCTCGTATTAATACGCCAGAAAGCACTGGTGGGCAATTTACCAGGCAACCACAAAGTCTACAAGATCACCAAGATAGCCGTCATTCCCCTGTCTGACGAAGAGCCACAGGAGCTTGAGCTGGAGCTTTGCAAGAAGCATCACTTTGGAATCGACAGACCAGACAAACTGGCCCAGTCTCCTGATGAATCAAAGTTCTTGATGAAGACCTTCAGCCAGATCAAATCTAATGTTGCTGTGCCCATCAAGAAAAagGTCAAGgaaaataaagagaaagaaCGCCTGGAGAGGCGGCTGCTGGATGAGCTGTACAAGGTATTCATGGACTCCGATTCCTTCTACTACAGCATGACCTACGACCTGACAAACAGTGTGCAGCGCAAGGGAGACTCGGATAAGTCCAGCTTACCCCTATGGAAACAGGTGGACGACCGTTTCTTCTGGAATAAACACATGATCCAGGACCTTATTGACCTTCAGGTGCCAGAGGTGGACTTCTGGGTGATACCAATCATCCAGGGCTTTGTACAGGTGGAGGAACTGGTGGTGAACTACAACGAGACATCCGACGAAGAGAGGAGCAGCCCTGAAACGCCACCACAGGAGGTCACCTGTGTTGATGACATCCATCCCCGCTTCACTGTGGCCCTAATCTCCAGACGCAGCCGCCACCGCGCAGGGATGCGGTACAAACGCAGAGGAGTGGATACCGATGGCCATGTGGCTAACTATGTGGAGACGGAGCAGTTAATCCACGTGCACAGCCACACTCTGTCCTTTGTGCAGACTCGTGGCTCCGTGCCTGTCTTCTGGAGCCAGGCGGGGTACCGCTACAATCCCCGGCCACGCTTAGAGAAAGGAGAGAAGGAGACCATGTCTTACTTTTCTGCTCACTTTGAAGAACAGCTTAAACTCTACAAGACGCAGGTCATCATTAACTTAGTGGATCAAAGTGGACGGGAGAAGATAATTGGGGACGCATATCTGAAGCAAGTCCTGCTTTACAACAACCCAAACCTCACATATGTTTCATTTGACTTCCATGAGCACTGCCGAGGTATGAAGTTTGAGAATGTGCAAGTACTGACCGATGCGATCTCTGACCTCATCACTGACATGAAGTGGGCCTGGGTGGATCAGGCTGGAGTCATCTGCAAGCAGGAGGGTATCTTTAGAGTCAACTGTATGGACTGCCTCGACAGGACCAACGTGGTCCAGGCTGCTATTGCTCGGGCGGTGATGGAACAACAGCTGAAGAAACTGGGTGTGATGCCTCCGGAGCAGCCTCTGCCTCTCAAATGCTACAGGATTTATCAGATCATGTGGGCCAACAATGGAGACACCATCAGCAGACAGTATGCAGGCACAGCAGCGCTCAAGGGAGATTTCACCAGGACGGGGGAGAGGAAACTGGCTGGTGTGATGAAGGATGGCGTGAACTCAGCCAACCGCTACTATCTGAACCGCTTCAGGGATGCTTATAGACAAGCAGTCATTGACCTAATGATGGGCCTGCCAGTGACAGAGGACCTGTACTCCATCTTTAGTAAGGAGAAGGAgcatgaagagaaagagaaagagagccagAGGGGAGCGCAGGAGCAGGTCAGCCTCCTGCTGCAGACCTACATGCAGCTTTTGCTGCTTGATGATGAGAAGTTTCATGGAGGTTGGGCCCTCATCAATTGTGACATGAGCCTCATTGATGCATCCAACAAAGACGTGGATGTGCTGCTGCTTCTGTCTGACAAAGCCTATTACATTGCATActaCGATGAAGAAGCAGACAAAGTCGACCAATACCAGCGCCTCAATTTAGAGGGTTTGGAAAAGATCGAAATTGgtcCAGAGCCTACTCTGTTTGGGAAGCCAAAGTTCTGCTGTATGCGTTTGCATTACAGGAATGAAGAGACGAGTGGATACTTTCACACACTGAGAGCAGTAACACGAAATCCTGAGGATGATGGAAAAGACACATTGCAATGCATAGCTGAGATGCTTCGCATAATGAAACAGGCCACGGGGCTGGACCTGCTTGTGGTTGAAAAGAAGCTGGAGAGGCGGCAGAGTAGGCCTCATGAGGATATAATGGGGATCCAGAACAAACCTGCTGACCATGTCCAGGGTAGCTCCGGTCTAGCTCAGGGCAAAAGTTTCCTCCTCAACAAGTTCTCCTCTCTTAATCAGAAAGTTAAACAGACCAAGACGAACGTAAACATTGGCCCCTTCAAGCCCCTCGGGAGGCTGGGCAACTTCTCTAAGCCTGATGTAAAAGTCAATTTCCTGAAGCCAACTATGCATGTCAACCTGTGGAAGTCAGACAGCAGCTTGGAAACATCGGATAGCAACCCTGGCACAGGAGCCCGAAAAGATATCGGTGACGGGCACTCTGAAATCTCCGACGACTCTGACTCCTACAACTCTGACCCAGACCACCCGTGCTCTGGTTCTTTAGAAAACGTGGACTATGTGCTGCCCAGCTGCGGCATTGTAGCATCAAACCCACGACTGGGCAGTCGCTCCCAGTCTATTGGCAGTGTGGAGCTAAATATCCCCTCTGTTATCCGAGTCACTGGCTGTGACGAGAAGCAGGAAAGCCCTTCTCGAGACAGTGATGACAAGTCCCCAGGGGCCGCCTCGGTGGCTGAAGAAGCCATTCTGATTGACTTTGGTACCCCCATCGATGCCTACTGCCACCAGTTTGTCCAGGATGCACAGACCAAACCTGTTGAGGTGTTTGGAGAGCAGCCGCCCCCGCTCAACCCTGTGGTGCCTGTGCAGAATAAGACTCTAGCAGAGCCAGACAAGCGGCCGAGCTCTGAGCCGCAGCATAAGCCGGAGGAGCCCCAGCTCCCCAGGCCGTCCCAGCTAGACGTCGACTCCACTACCTCCAGTTCCAACCTCCTCGCTGTCCAAAAGGTCAGCTCTGCGGCCTCAGGAGGCTCTCAGAGGAGCCTGTGTTCACAGATGGAGGGCAGCCTCGGCCCCTCACCTGCCGACAGCAACGGCAGCCGAGTGGTGTCCCCCTTTGCCAAGATCAAGAGCTCCATGGTCCAGGTGGCCAGCCTCACCCAGGCGGGACTCACCCAGGGCATCAACTTTGCTGTGGCGAAGGTACAGAAGAGCCCAGAGCCAGACACTGTCAACGAAGCCCAAGAGAGCGAGCTGAAGGCAATGTTTACACAGTGCCAGACCAGGATCATTCAGATCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266908 lncRNA upstream 8860 25189430 ~ 25189679 (+) True G196563
TU266903 lncRNA upstream 16726 25178159 ~ 25181813 (+) True G196558
TU266891 lncRNA upstream 54307 25143165 ~ 25144232 (+) False cacul1
XR_005637083.1 lncRNA upstream 79415 25117090 ~ 25119124 (+) False LOC120547601
TU266849 lncRNA upstream 79417 25117078 ~ 25119122 (+) False LOC120547601
TU266954 lncRNA downstream 8736 25219547 ~ 25219914 (+) True G196595
TU267020 lncRNA downstream 107455 25318266 ~ 25320869 (+) True G196648
TU267076 lncRNA downstream 216832 25427643 ~ 25433896 (+) True G196690
TU267084 lncRNA downstream 283562 25494373 ~ 25495505 (+) False LOC120548229
TU267082 lncRNA downstream 285857 25496668 ~ 25499150 (+) True G196696
XM_039784295.1 mRNA upstream 668 25191819 ~ 25197871 (+) True bag3
XM_039784114.1 mRNA upstream 21080 25171104 ~ 25177459 (+) True pkd2l1
XM_039784234.1 mRNA upstream 29489 25167925 ~ 25169050 (+) True atoh7
XM_039784272.1 mRNA upstream 33910 25144557 ~ 25164629 (+) True mypn
XM_039784767.1 mRNA upstream 54285 25139047 ~ 25144254 (+) True cacul1
XM_039784600.1 mRNA downstream 11614 25222425 ~ 25232512 (+) True LOC120548364
XM_039783765.1 mRNA downstream 85452 25296263 ~ 25299446 (+) True pcbd1
XM_039784396.1 mRNA downstream 105584 25316395 ~ 25318133 (+) True neurog3
XM_039784513.1 mRNA downstream 203182 25413993 ~ 25430909 (+) False fam204a
XM_039784510.1 mRNA downstream 203183 25413994 ~ 25430909 (+) False fam204a
TU266801 other upstream 187778 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 629372 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 830940 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1592965 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2529072 22647914 ~ 22669467 (+) False tasp1
TU267128 other downstream 402596 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 606440 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 771934 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1452348 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1514948 26725759 ~ 26735787 (+) False tmem254

Expression Profile