RNA id: XM_039784617.1


Basic Information

Item Value
RNA id XM_039784617.1
length 2357
RNA type mRNA
GC content 0.42
exon number 16
gene id spast
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 22978152 ~ 22982603 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAATcagagaagaagaagtagaACAAGAAGTACAAATAGAGTATAGCGGAAGCTAGCTGTAGAGATGTTTGTGTATTGATCTAATATGTCACATATACGGCAAAAAGATTGTTCAATAAACCAAAGACTTCGGATTGACCCAGTTATAAATGCGATTTGAAAGCTCCATTTGACCGTGTCCTCTTTCAAAAGTGGCTAACTCTGAGTTACAACTGAGAACAAGGAGACAGAGTAACGTGGAATTAGAGTCGGCCAAAAATAATGGCAAGTAAAAGCAAAGACAGCGGTGAAGTTATTAAAAACTACCATAAACAGGCGTTCGAGTATGTATCGAAGGCGTTACGGATCGACGAAGATGATACAGGAGATAAAGAGGAGGCTGTGCAGTGGTACAAGAAGGGTATTTCTGTGCTCGAAAGGGGTATTGAAGTAGAGATCACGGGGCAAGGAGAGCAATATGACAGATCAAAGAGACTTCAAGATAAAATGGTCACCAATCTCACCATGGCAAAAGATCGGCTCGCTCTGTTAGAGGCAGCAATGGCAAATAAAAGGAGGAGTGATCCCCAGAAGACCTCAAATCATGCTCTTACACAACCAAAGCCTGTGCCTAAAAGCCAGCCTGCAGTGCGAGGTGTGTCCACTAACATCAGGACCTCCACTGTTAGAACCCCACCCAGACCCAGTGATCAAAAGTTGACGCCACGGGTCGCAAAAACTCAAAATGGAAAACCTGCAGCTGTGAAACTGCTCCCAAAGAGAGATATGAAAAACTTCAAGAATGTGGACAGCAAATTGGCCAATTtgattatgaatgaaattgttGACAGTGGAGCGTCTGTATTCTTTAAAGACATTGCGGGACAGGACCTGGCCAAGCAAGCACTCCAAGAGATTGTCATCCTCCCTGCCTTAAGACCAGAGctCTTTACTGGCCTGAGAACTCCAGCACGTGGTTTACTTTTATTTGGCCCACCTGGAAATGGGAAAACCATGCTGGCCAAAGCAGTCGCAGCGGAATCAAAAGCCACATTCTTTAACATCAGCGCTGCCAGTTTGACCTCTAAATATGTGGGAGAGGGCGAGAAGCTTGTGCGAGCACTGTTTGCAGTTGCCAGAGAATTGCAGCCCTCTGTGATCTTTATCGATGAAGTTGACAGCTTGCTCTGTgaaagaagggagggagaaCACGAGGCCTCTCGTCGATTAAAAACCGAGTTCCTCATTGAGTTTGATGGGGTGCAGTCAGGAGGGGATGACAGGGTGCTCGTAATGGGAGCGACCAACAGGCCTCAGGAGCTTGATGAAGCTGTACTAAGGCGTTTTGCAAAAAGGATTTATGTGGCATTGCCGGATGGGGAGACAAGAGTTACGCTGCTGAAAAACCTTTTGGGAAAGCATGGCAATCCACTGAGCAAAAATGAGCTTTCCCTTCTCGCAAAAAAGAGTGAAGGATATTCAGGAAGTGATCTCACGTCATTAGCCAAAGATGCTGCGCTCGGGCCTATCAGAGAGTTGGGACCAGATCAAGTCCGAAGTATGGCTGCTAGTGAGGTGCGTAACATCAAGATGAAAGACTTTGAGGATTCCCTGAAGCGCATTAAGCCCAGTGTTAGCCCAGCAACTCTTCATATGTATACCAAATGGAACAAAGATTTTGGGGACACAACAGCTATTTGAATTTTGAACTTTTcacttgttaaaaaaacaaaaacaaaaaaactgttaatTCCTCTGTTTTCATCTACTGGTACAAGACGTCATTAACATAAATGAACTTAAAAGCCTGGAACAAACCCTTTGTAGGGTGGTAAAGCTATAATGTATAAATATTATGAAATTAGAAAACATTTCCTGTTATATGGGAAGGCTTTGCTAGTAAGAGTTTCTTTACTGTGTTTTTACACTCCTTAAACACTGTCTTGCTATTTgaaattacattatttattcTTAAGAATGTCCTGTAAAATTACTATTGATCTTTCTCTTACCTCGAGGGCAGCAAGTTTCTGTAAATCCTGACAACCTCACTGATTTTGATCATTTTACACATCCATTATTTTCCTGATGCATTGACATGTTTATGGTATTGATCACCAAATGCTCTCTGTACTTGTACATATGCAAGAGTGATAATAATTGGGAGAATATCTGCCAAATTGGGTGAATTTGTattgcatttgtttgttttttcatttgcaCTTATAGTTTGTAGATACAAATACTTTTATTGTAGTTGAAAGTAGGAGACCTAATGAATTGTTGTGATGGCCAAGAAGAGTTATGATTTAATTGAGCAGAACTGTACTGGCATCCTACTTTCTTCATGcatcaataaatacatttattgaagTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266084 lncRNA upstream 14022 22963967 ~ 22964130 (+) True G195973
TU266079 lncRNA upstream 53490 22922776 ~ 22924662 (+) True G195968
TU266075 lncRNA upstream 56253 22921175 ~ 22921899 (+) True G195964
TU266076 lncRNA upstream 57143 22854538 ~ 22921009 (+) True G195965
XR_005637110.1 lncRNA upstream 211499 22723027 ~ 22766653 (+) True LOC120547852
TU266141 lncRNA downstream 7081 22989684 ~ 22989890 (+) True G196016
TU266142 lncRNA downstream 7830 22990433 ~ 22990702 (+) True G196017
TU266168 lncRNA downstream 49849 23032452 ~ 23034791 (+) True G196028
TU266188 lncRNA downstream 153843 23136446 ~ 23144652 (+) True G196036
TU266210 lncRNA downstream 164209 23146812 ~ 23147635 (+) True G196057
XM_039783482.1 mRNA upstream 14198 22959309 ~ 22963954 (+) True mkks
XM_039784018.1 mRNA upstream 57840 22894831 ~ 22920312 (+) True jag1b
XM_039783857.1 mRNA upstream 285548 22647914 ~ 22692604 (+) True tasp1
XM_039783038.1 mRNA downstream 19401 23002004 ~ 23009219 (+) True LOC120547567
XM_039783367.1 mRNA downstream 28786 23011389 ~ 23030751 (+) False vit
XM_039783366.1 mRNA downstream 28786 23011389 ~ 23030751 (+) False vit
XM_039783362.1 mRNA downstream 28787 23011390 ~ 23032132 (+) True vit
XM_039783365.1 mRNA downstream 28787 23011390 ~ 23030751 (+) False vit
XR_005637123.1 other upstream 308685 22647914 ~ 22669467 (+) False tasp1
TU265655 other upstream 1463024 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 1646865 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 2224343 20752773 ~ 20753809 (+) True G195518
TU265393 other upstream 2447837 20529767 ~ 20530315 (+) True G195448
XR_005637111.1 other downstream 579680 23562283 ~ 23605574 (+) False disc1
XR_005637109.1 other downstream 1375323 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 1581947 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 2025909 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 2630804 25613407 ~ 25620675 (+) True prdx3

Expression Profile